Mercurial > repos > devteam > package_bwa_0_5_9
comparison tool_dependencies.xml @ 1:0eb3d3c40344
Uploaded updated tool dependency definition specifiying precompiled binaries.
| author | devteam |
|---|---|
| date | Tue, 17 Dec 2013 09:20:31 -0500 |
| parents | 7959322e3f4b |
| children | ec2595e4d313 |
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| 0:7959322e3f4b | 1:0eb3d3c40344 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="bwa" version="0.5.9"> | 3 <package name="bwa" version="0.5.9"> |
| 4 <install version="1.0"> | 4 <install version="1.0"> |
| 5 <actions> | 5 <actions_group> |
| 6 <action type="download_by_url">http://downloads.sourceforge.net/project/bio-bwa/bwa-0.5.9.tar.bz2</action> | 6 <actions architecture="i386" os="linux"> |
| 7 <action type="shell_command">make</action> | 7 <action type="download_by_url">http://depot.galaxyproject.org/package/linux/i386/bwa/bwa-0.5.9-Linux-i686.tgz</action> |
| 8 <action type="move_file"> | 8 <action type="move_directory_files"> |
| 9 <source>bwa</source> | 9 <source_directory>.</source_directory> |
| 10 <destination>$INSTALL_DIR/bin</destination> | 10 <destination_directory>$INSTALL_DIR/bin</destination_directory> |
| 11 </action> | 11 </action> |
| 12 </actions> | |
| 13 <actions architecture="x86_64" os="linux"> | |
| 14 <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/bwa/bwa-0.5.9-Linux-x86_64.tgz</action> | |
| 15 <action type="move_directory_files"> | |
| 16 <source_directory>.</source_directory> | |
| 17 <destination_directory>$INSTALL_DIR/bin</destination_directory> | |
| 18 </action> | |
| 19 </actions> | |
| 20 <actions architecture="x86_64" os="darwin"> | |
| 21 <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/x86_64/bwa/bwa-0.5.9-Linux-x86_64.tgz</action> | |
| 22 <action type="move_directory_files"> | |
| 23 <source_directory>.</source_directory> | |
| 24 <destination_directory>$INSTALL_DIR/bin</destination_directory> | |
| 25 </action> | |
| 26 </actions> | |
| 27 <actions> | |
| 28 <action type="download_by_url">http://downloads.sourceforge.net/project/bio-bwa/bwa-0.5.9.tar.bz2</action> | |
| 29 <action type="shell_command">make</action> | |
| 30 <action type="move_file"> | |
| 31 <source>bwa</source> | |
| 32 <destination>$INSTALL_DIR/bin</destination> | |
| 33 </action> | |
| 34 </actions> | |
| 12 <action type="set_environment"> | 35 <action type="set_environment"> |
| 13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | 36 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> |
| 14 </action> | 37 </action> |
| 15 </actions> | 38 </actions_group> |
| 16 </install> | 39 </install> |
| 17 <readme> | 40 <readme> |
| 41 This is the last version of BWA that uses separate files for BWT and reverse BWT. | |
| 42 | |
| 18 Program: bwa (alignment via Burrows-Wheeler transformation) | 43 Program: bwa (alignment via Burrows-Wheeler transformation) |
| 19 Version: 0.5.9-r16 | 44 Version: 0.5.9-r16 |
| 20 Contact: Heng Li <lh3@sanger.ac.uk> | 45 Contact: Heng Li <lh3@sanger.ac.uk> |
| 21 | 46 |
| 22 Usage: bwa <command> [options] | 47 Usage: bwa <command> [options] |