Mercurial > repos > devteam > package_bwa_0_7_10_039ea20639

changeset 0:5b9aca1e1c07 draft default tip

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author devteam
date Mon, 29 Sep 2014 15:53:11 -0400
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files tool_dependencies.xml
diffstat 1 files changed, 23 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Sep 29 15:53:11 2014 -0400
@@ -0,0 +1,23 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="bwa" version="0.7.10.039ea20639">
+        <install version="1.0">
+            <actions_group>
+                <actions architecture="x86_64" os="linux">
+                    <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/bwa/bwa-0.7.10.039ea20639.tar.gz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>       
+                </actions>                
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme>
+Binary files in this package are compiled from github source code version 039ea20639
+This is package dependency for tools relying on bwa mapper package. This package is distributed as x86_64 binaries only. These binaries should work on any of our stated supported linux platforms other than RHEL/CentOS 5.
+        </readme>
+    </package>
+</tool_dependency>