Mercurial > repos > devteam > package_emboss_5_0_0
comparison tool_dependencies.xml @ 0:cf998ddc0542 draft default tip
Uploaded tool dependency definition.
author | devteam |
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date | Wed, 11 Dec 2013 16:23:37 -0500 |
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-1:000000000000 | 0:cf998ddc0542 |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <package name="emboss" version="5.0.0"> | |
4 <install version="1.0"> | |
5 <actions_group> | |
6 <actions architecture="i386" os="linux"> | |
7 <action type="download_by_url">http://depot.galaxyproject.org/package/linux/i386/emboss/emboss-5.0.0-Linux-i686.tgz</action> | |
8 <action type="move_directory_files"> | |
9 <source_directory>.</source_directory> | |
10 <destination_directory>$INSTALL_DIR</destination_directory> | |
11 </action> | |
12 </actions> | |
13 <actions architecture="x86_64" os="linux"> | |
14 <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/emboss/emboss-5.0.0-Linux-x86_64.tgz</action> | |
15 <action type="move_directory_files"> | |
16 <source_directory>.</source_directory> | |
17 <destination_directory>$INSTALL_DIR</destination_directory> | |
18 </action> | |
19 </actions> | |
20 <actions architecture="x86_64" os="darwin"> | |
21 <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/x86_64/emboss/emboss-5.0.0-Darwin-x86_64.tgz</action> | |
22 <action type="move_directory_files"> | |
23 <source_directory>.</source_directory> | |
24 <destination_directory>$INSTALL_DIR</destination_directory> | |
25 </action> | |
26 </actions> | |
27 <actions> | |
28 <package name="libx11" version="1.5.0"> | |
29 <repository changeset_revision="bfb1f66b1402" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
30 </package> | |
31 <package name="libgd" version="2.1.0"> | |
32 <repository changeset_revision="3918b86c4f1f" name="package_libgd_2_1_0" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
33 </package> | |
34 <package name="libxproto" version="7.0.23"> | |
35 <repository changeset_revision="6a512bc84b0d" name="package_libxproto_7_0_23" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
36 </package> | |
37 <package name="libxcb" version="1.9.1"> | |
38 <repository changeset_revision="283d04f807f7" name="package_libxcb_1_9_1" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
39 </package> | |
40 <action type="download_by_url">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/EMBOSS-5.0.0.tar.gz</action> | |
41 <action type="set_environment_for_install"> | |
42 <repository changeset_revision="3918b86c4f1f" name="package_libgd_2_1_0" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu"> | |
43 <package name="libgd" version="2.1.0" /> | |
44 </repository> | |
45 <repository changeset_revision="bfb1f66b1402" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu"> | |
46 <package name="libx11" version="1.5.0" /> | |
47 </repository> | |
48 <repository changeset_revision="6a512bc84b0d" name="package_libxproto_7_0_23" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu"> | |
49 <package name="libxproto" version="7.0.23" /> | |
50 </repository> | |
51 <repository changeset_revision="283d04f807f7" name="package_libxcb_1_9_1" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu"> | |
52 <package name="libxcb" version="1.9.1" /> | |
53 </repository> | |
54 </action> | |
55 <action type="shell_command"> | |
56 export LDFLAGS="-L$XCB_LIBS -lm" | |
57 export CFLAGS="-I$XPROTO_INCLUDES" && \ | |
58 ./configure --prefix=$INSTALL_DIR \ | |
59 --x-includes=$X11_INCLUDE_DIR \ | |
60 --x-libraries=$X11_LIB_DIR \ | |
61 --with-pngdriver=$GD_ROOT | |
62 </action> | |
63 <action type="shell_command">make && make install</action> | |
64 <action extract="true" type="download_file">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action> | |
65 <action type="change_directory">PHYLIP-3.6b</action> | |
66 <action type="shell_command"> | |
67 export LDFLAGS="-L$XCB_LIBS -lm" | |
68 export CFLAGS="-I$XPROTO_INCLUDES" && \ | |
69 ./configure --prefix=$INSTALL_DIR \ | |
70 --x-includes=$X11_INCLUDE_DIR \ | |
71 --x-libraries=$X11_LIB_DIR \ | |
72 --with-pngdriver=$GD_ROOT | |
73 </action> | |
74 <action type="shell_command">make && make install</action> | |
75 </actions> | |
76 <action type="set_environment"> | |
77 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
78 <environment_variable action="set_to" name="EMBOSS_ACDROOT">$INSTALL_DIR/share/EMBOSS/acd</environment_variable> | |
79 <environment_variable action="set_to" name="EMBOSS_DATA">$INSTALL_DIR/share/EMBOSS/data</environment_variable> | |
80 <environment_variable action="set_to" name="PLPLOT_LIB">$INSTALL_DIR/share/EMBOSS</environment_variable> | |
81 </action> | |
82 </actions_group> | |
83 </install> | |
84 <readme> | |
85 These links provide information for building the Emboss package in most environments. | |
86 | |
87 System requirements | |
88 http://emboss.sourceforge.net/download/#Requirements | |
89 | |
90 Platform-dependent notes | |
91 http://emboss.sourceforge.net/download/#Platforms | |
92 </readme> | |
93 </package> | |
94 </tool_dependency> |