Mercurial > repos > devteam > package_fastqc_0_10_1

diff tool_dependencies.xml @ 0:4c650e5219e0 draft default tip

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Imported from capsule None
author devteam
date Mon, 27 Jan 2014 09:24:56 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Jan 27 09:24:56 2014 -0500
@@ -0,0 +1,22 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="FastQC" version="0.10.1">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR</destination_directory>
+                </action>
+                <action type="chmod">
+                    <file mode="755">$INSTALL_DIR/fastqc</file>            
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                    <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme></readme>
+    </package>
+</tool_dependency>
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