# HG changeset patch
# User devteam
# Date 1414075868 14400
# Node ID 4a49481f29e7bb2f9f1935f6a891d5317772e904
# Parent  61e41d21cb6ff1d708e3e4a641b0dae1cd07fb1c
Uploaded

diff -r 61e41d21cb6f -r 4a49481f29e7 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Aug 26 14:19:27 2013 -0400
+++ b/tool_dependencies.xml	Thu Oct 23 10:51:08 2014 -0400
@@ -1,19 +1,22 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="picard" version="1.56.0">
+    <package name="picard" version="1.122.0">
         <install version="1.0">
-            <actions>
-                <action type="download_by_url">http://downloads.sourceforge.net/project/picard/picard-tools/1.56/picard-tools-1.56.zip</action>
-                <action type="move_directory_files">
-                    <source_directory>picard-tools-1.56</source_directory>
-                    <destination_directory>$INSTALL_DIR/jars</destination_directory>
+            <actions_group>
+                <actions architecture="x86_64" os="linux">
+                    <action type="download_by_url">https://github.com/broadinstitute/picard/releases/download/1.122/picard-tools-1.122.zip</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>       
+                </actions>                
+                <action type="set_environment">
+                    <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                 </action>
-                <action type="set_environment">
-                    <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/jars</environment_variable>
-                </action>
-            </actions>
+            </actions_group>
         </install>
         <readme>
+This picard package dependency is retrieved directly from https://github.com/broadinstitute/picard/releases
         </readme>
     </package>
 </tool_dependency>