# HG changeset patch # User devteam # Date 1394208514 18000 # Node ID 6a72f1ba72939b5f31ba6efe46b2602676f2cc97 # Parent e1c7a7cda95662aa8e175dafe100bf33b394f783 Uploaded tool dependency definition that attempts to download a precompiled binary. diff -r e1c7a7cda956 -r 6a72f1ba7293 tool_dependencies.xml --- a/tool_dependencies.xml Mon Feb 24 16:40:45 2014 -0500 +++ b/tool_dependencies.xml Fri Mar 07 11:08:34 2014 -0500 @@ -1,28 +1,97 @@ - - - - - - http://cran.rstudio.com/src/base/R-2/R-2.15.0.tar.gz - - - - + + + + http://depot.galaxyproject.org/package/darwin/x86_64/R/R-2.15.0-Darwin-x86_64.tgz + + . + $INSTALL_DIR + + + + http://depot.galaxyproject.org/package/linux/x86_64/R/R-2.15.0-Linux-x86_64.tgz + + . + $INSTALL_DIR + + + $INSTALL_DIR/lib/libtcl8.4.so + $INSTALL_DIR/lib/libtk8.4.so + + + + + + + + + + + + + + + + + + + http://cran.rstudio.com/src/base/R-2/R-2.15.0.tar.gz + + + + + + + + + + + + + + + + + + + export LDFLAGS="-L$PNG_LIBS -L$READLINE_LIBS" && + export LDFLAGS="$LDFLAGS -Wl,-rpath,$READLINE_LIBS" && + export LDFLAGS="$LDFLAGS -Wl,-rpath,$PIXMAN_LIB_PATH" && + export LDFLAGS="$LDFLAGS -Wl,-rpath,$PNG_LIB_PATH" && + export LDFLAGS="$LDFLAGS -Wl,-rpath,$FREETYPE_LIB_PATH" && + export CFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDES" && + export CXXFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDES" && + export CPPFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDES" && + ./configure --with-tcltk \ + --with-blas \ + --with-lapack \ + --with-readline \ + --with-cairo \ + --with-libpng \ + --without-x \ + --enable-R-shlib \ + --disable-R-framework \ + --libdir=$INSTALL_DIR/lib \ + --prefix=$INSTALL_DIR + + + sed -i.bak 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R + sed -i.bak 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/lib/R/bin/R + + + $INSTALL_DIR + $INSTALL_DIR/lib/R + $INSTALL_DIR/lib/R/library + $INSTALL_DIR/bin - $INSTALL_DIR - export LDFLAGS="-L$READLINE_LIBS" && ./configure --with-blas --with-lapack --enable-R-shlib --with-x=no --prefix=$INSTALL_DIR && make && make install - - $INSTALL_DIR/lib/R - $INSTALL_DIR/lib/R/library - $INSTALL_DIR/lib/R/bin - - + - R is a free software environment for statistical computing and graphics - WARNING: See custom compilation options above - + + The precompiled versions of this package were built 2014-03-06. + R is a free software environment for statistical computing and graphics. + NOTE: See custom compilation options above. +