annotate test-data/picard_MeanQualityByCycle_test1.tab @ 28:881d7645d1bf draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 92e89c89178482870c14cf15f38fbfd4470aa130"
author iuc
date Sat, 15 Jan 2022 12:39:30 +0000
parents 5053a18d9bc8
children 3f254c5ced1d
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1 ## htsjdk.samtools.metrics.StringHeader
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5053a18d9bc8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 7036343b9ac0a0ffc2ce4f6db465b9298ef05e73
iuc
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2 # MeanQualityByCycle CHART_OUTPUT=/tmp/tmpYRm8q4/files/000/dataset_71.dat ALIGNED_READS_ONLY=false PF_READS_ONLY=false INPUT=picard_MeanQualityByCycle_bam OUTPUT=/tmp/tmpYRm8q4/files/000/dataset_70.dat ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT REFERENCE_SEQUENCE=localref.fa STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
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3 ## htsjdk.samtools.metrics.StringHeader
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5053a18d9bc8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 7036343b9ac0a0ffc2ce4f6db465b9298ef05e73
iuc
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4 # Started on: Sat Apr 14 09:33:43 CEST 2018
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7 ## HISTOGRAM java.lang.Integer
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8 CYCLE MEAN_QUALITY
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3d4f1fa26f0e Uploaded
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diff changeset
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3d4f1fa26f0e Uploaded
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diff changeset
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3d4f1fa26f0e Uploaded
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diff changeset
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3d4f1fa26f0e Uploaded
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diff changeset
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3d4f1fa26f0e Uploaded
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diff changeset
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3d4f1fa26f0e Uploaded
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
parents:
diff changeset
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3d4f1fa26f0e Uploaded
devteam
parents:
diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
parents:
diff changeset
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3d4f1fa26f0e Uploaded
devteam
parents:
diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
parents:
diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
parents:
diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
487 479 28.02
3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
491 483 28.68
3d4f1fa26f0e Uploaded
devteam
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diff changeset
492 484 27.18
3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
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diff changeset
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3d4f1fa26f0e Uploaded
devteam
parents:
diff changeset
498 490 26.65
3d4f1fa26f0e Uploaded
devteam
parents:
diff changeset
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3d4f1fa26f0e Uploaded
devteam
parents:
diff changeset
500 492 25.41
3d4f1fa26f0e Uploaded
devteam
parents:
diff changeset
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3d4f1fa26f0e Uploaded
devteam
parents:
diff changeset
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3d4f1fa26f0e Uploaded
devteam
parents:
diff changeset
503 495 26.68
3d4f1fa26f0e Uploaded
devteam
parents:
diff changeset
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3d4f1fa26f0e Uploaded
devteam
parents:
diff changeset
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3d4f1fa26f0e Uploaded
devteam
parents:
diff changeset
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3d4f1fa26f0e Uploaded
devteam
parents:
diff changeset
507 499 24.26
3d4f1fa26f0e Uploaded
devteam
parents:
diff changeset
508 500 24.58
3d4f1fa26f0e Uploaded
devteam
parents:
diff changeset
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3d4f1fa26f0e Uploaded
devteam
parents:
diff changeset
510 502 19.15
3d4f1fa26f0e Uploaded
devteam
parents:
diff changeset
511