Mercurial > repos > devteam > picard

annotate test-data/bwa_wrapper_in3.fastqsanger @ 3:bf1c3f9f8282

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Fix for FastqToSam MAX_Q usage detection.
author Daniel Blankenberg <dan@bx.psu.edu>
date Fri, 03 May 2013 17:13:01 -0400
parents 1cd7f3b42609
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
1 @seq1/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
2 ACGCTCCTTTAAAATATC
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
3 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
4 IIIII$%*$G$A31I&&B
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
5 @seq2/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
6 CAGCTCGAGAAGCTCTTA
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
7 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
8 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
9 @seq3/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
10 CTACTGACCGCTCTCGTG
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
11 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
12 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
13 @seq4/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
14 TAGGTGGTCAACCATTTT
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
15 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
16 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
17 @seq5/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
18 TTTCTATGTGGCTTAATA
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
19 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
20 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
21 @seq6/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
22 GTAGGTGGTCAACAATTT
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
23 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
24 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
25 @seq7/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
26 TTTAATTGCAGGGGCTTC
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
27 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
28 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
29 @seq8/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
30 ATGCGCTCTATTCTCTGG
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
31 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
32 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
33 @seq9/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
34 TTCTGTTGGTGCTGATAT
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
35 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
36 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
37 @seq10/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
38 AGGGCGTTGAGTTCGATA
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
39 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
40 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
41 @seq11/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
42 ATCCCCAATGCTTGGCTT
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
43 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
44 IIIII$%*$G$A31I&&B
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
45 @seq12/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
46 GGATTGGCGTTTCCAACC
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
47 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
48 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
49 @seq13/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
50 CCCCAATCCTTGCCTTCC
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
51 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
52 IIIAAIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
53 @seq14/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
54 TGATATTTTGACTTTGAG
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
55 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
56 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
57 @seq15/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
58 TTACGAAACGCGACGCCG
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
59 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
60 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
61 @seq16/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
62 TTATTTTTCTCCAGCCAC
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
63 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
64 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
65 @seq17/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
66 AAACAATACTTTAGGCAT
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
67 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
68 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
69 @seq18/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
70 CCGTTCCATAAGCAGATG
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
71 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
72 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
73 @seq19/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
74 GAGCGTCCTGGTGCTGAT
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
75 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
76 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
77 @seq20/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
78 ACTCCGGTTATCGCTGGC
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
79 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
80 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
81 @seq21/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
82 TAAGCATTTGGTTCAGGG
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
83 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
84 IIIII$%*$G$A31I&&B
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
85 @seq22/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
86 GTTACGACGCGACGCCGT
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
87 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
88 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
89 @seq23/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
90 TTTAATAACCCTATAGAC
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
91 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
92 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
93 @seq24/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
94 CTTGGCTTCCCTAAGCAG
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
95 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
96 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
97 @seq25/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
98 CGTGCTCGTTGCTGCGTT
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
99 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
100 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
101 @seq26/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
102 AAGGATGTTTTCCGTTCT
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
103 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
104 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
105 @seq27/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
106 TGTTTGGTGCTGATATTG
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
107 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
108 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
109 @seq28/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
110 TCCAGCCACTAAAGTGAG
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
111 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
112 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
113 @seq29/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
114 GATAATGATTGGGGTATC
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
115 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
116 IIIIIIIIIIIIIIIIII
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
117 @seq30/2
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
118 ACCATAAGCAGATGGATA
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
119 +
1cd7f3b42609 Uploaded tool.
devteam
parents:
diff changeset
120 IIIIIIIIIIIIIIIIII