Mercurial > repos > devteam > picard
comparison picard_SamToFastq.xml @ 8:3a3234d7a2e8 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
| author | devteam |
|---|---|
| date | Thu, 16 Jul 2015 15:53:10 -0400 |
| parents | 3d4f1fa26f0e |
| children | 5eaa8a968300 |
comparison
equal
deleted
inserted
replaced
| 7:379fdf4c41ac | 8:3a3234d7a2e8 |
|---|---|
| 1 <tool name="SamToFastq" id="picard_SamToFastq" version="1.126.0"> | 1 <tool name="SamToFastq" id="picard_SamToFastq" version="@TOOL_VERSION@.0"> |
| 2 <description>extract reads and qualities from SAM/BAM dataset and convert to fastq</description> | 2 <description>extract reads and qualities from SAM/BAM dataset and convert to fastq</description> |
| 3 <requirements> | |
| 4 <requirement type="package" version="1.126.0">picard</requirement> | |
| 5 </requirements> | |
| 6 | |
| 7 <macros> | 3 <macros> |
| 8 <import>picard_macros.xml</import> | 4 <import>picard_macros.xml</import> |
| 9 </macros> | 5 </macros> |
| 10 | 6 <expand macro="requirements" /> |
| 11 <command> | 7 <command> |
| 12 | 8 |
| 13 echo "BAM" > $report && ## This is necessary for output dataset detection (see output tags below) | 9 echo "BAM" > $report && ## This is necessary for output dataset detection (see output tags below) |
| 14 | 10 |
| 15 @java_options@ | 11 @java_options@ |