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comparison test-data/picard_CollectGcBiasMetrics_test1.tab @ 5:3d4f1fa26f0e draft

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author devteam
date Tue, 16 Dec 2014 19:03:21 -0500
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4:ab1f60c26526 5:3d4f1fa26f0e
1 ## htsjdk.samtools.metrics.StringHeader
2 # picard.analysis.CollectGcBiasMetrics REFERENCE_SEQUENCE=localref.fa INPUT=/Users/anton/galaxy-central/database/files/000/dataset_616.dat OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_707.dat CHART_OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_708.dat SUMMARY_OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_706.dat WINDOW_SIZE=100 MINIMUM_GENOME_FRACTION=5.0E-5 ASSUME_SORTED=true IS_BISULFITE_SEQUENCED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
3 ## htsjdk.samtools.metrics.StringHeader
4 # Started on: Sat Oct 04 11:22:58 EDT 2014
5
6 ## METRICS CLASS picard.analysis.GcBiasDetailMetrics
7 GC WINDOWS READ_STARTS MEAN_BASE_QUALITY NORMALIZED_COVERAGE ERROR_BAR_WIDTH
8 24 2 0 0 0 0
9 25 15 0 0 0 0
10 26 13 0 0 0 0
11 27 18 0 0 0 0
12 28 50 5 21 4.843529 2.166092
13 29 47 0 0 0 0
14 30 63 0 0 0 0
15 31 97 4 20 1.997332 0.998666
16 32 167 3 23 0.870095 0.50235
17 33 178 4 22 1.088434 0.544217
18 34 225 8 22 1.722144 0.60887
19 35 291 5 22 0.832222 0.372181
20 36 391 1 21 0.123875 0.123875
21 37 506 4 24 0.382888 0.191444
22 38 570 0 0 0 0
23 39 640 0 0 0 0
24 40 729 0 0 0 0
25 41 846 1 24 0.057252 0.057252
26 42 1060 1 24 0.045694 0.045694
27 43 1182 13 22 0.532706 0.147746
28 44 1113 8 22 0.348142 0.123087
29 45 1161 7 20 0.29203 0.110377
30 46 1113 5 20 0.217589 0.097309
31 47 1035 8 23 0.374379 0.132363
32 48 956 9 23 0.455981 0.151994
33 49 913 1 24 0.053051 0.053051
34 50 785 5 22 0.308505 0.137968
35 51 607 5 22 0.398973 0.178426
36 52 436 104 22 11.553373 1.132901
37 53 354 13 23 1.778697 0.493322
38 54 288 0 0 0 0
39 55 232 6 21 1.252637 0.511387
40 56 133 0 0 0 0
41 57 108 2 24 0.89695 0.634239
42 58 65 0 0 0 0
43 59 38 0 0 0 0
44 60 29 0 0 0 0
45 61 10 0 0 0 0
46 62 2 0 0 0 0
47
48