Mercurial > repos > devteam > picard
comparison test-data/picard_EstimateLibraryComplexity_test1.tab @ 5:3d4f1fa26f0e draft
Uploaded
| author | devteam |
|---|---|
| date | Tue, 16 Dec 2014 19:03:21 -0500 |
| parents | |
| children | 05087b27692a |
comparison
equal
deleted
inserted
replaced
| 4:ab1f60c26526 | 5:3d4f1fa26f0e |
|---|---|
| 1 ## htsjdk.samtools.metrics.StringHeader | |
| 2 # picard.sam.markduplicates.EstimateLibraryComplexity INPUT=[/Users/anton/galaxy-central/database/files/000/dataset_951.dat] OUTPUT=/Users/anton/galaxy-central/database/files/001/dataset_1073.dat MIN_IDENTICAL_BASES=5 MAX_DIFF_RATE=0.03 MIN_MEAN_QUALITY=20 MAX_GROUP_RATIO=500 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).*. OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3472024 CREATE_INDEX=false CREATE_MD5_FILE=false | |
| 3 ## htsjdk.samtools.metrics.StringHeader | |
| 4 # Started on: Fri Oct 17 13:39:31 EDT 2014 | |
| 5 | |
| 6 ## METRICS CLASS picard.sam.DuplicationMetrics | |
| 7 LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE | |
| 8 Unknown 0 982 0 0 116 0 0.118126 3822 | |
| 9 | |
| 10 ## HISTOGRAM java.lang.Integer | |
| 11 duplication_group_count Unknown | |
| 12 1 781 | |
| 13 2 65 | |
| 14 3 12 | |
| 15 4 5 | |
| 16 5 3 | |
| 17 6 1 | |
| 18 |