Mercurial > repos > devteam > picard
comparison test-data/picard_QualityScoreDistribution_test1.tab @ 5:3d4f1fa26f0e draft
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| author | devteam |
|---|---|
| date | Tue, 16 Dec 2014 19:03:21 -0500 |
| parents | |
| children | 5053a18d9bc8 |
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| 4:ab1f60c26526 | 5:3d4f1fa26f0e |
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| 1 ## htsjdk.samtools.metrics.StringHeader | |
| 2 # picard.analysis.QualityScoreDistribution CHART_OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_968.dat ALIGNED_READS_ONLY=false PF_READS_ONLY=false INCLUDE_NO_CALLS=false INPUT=/Users/anton/galaxy-central/database/files/000/dataset_966.dat OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_967.dat REFERENCE_SEQUENCE=localref.fa ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false | |
| 3 ## htsjdk.samtools.metrics.StringHeader | |
| 4 # Started on: Wed Oct 15 14:31:45 EDT 2014 | |
| 5 | |
| 6 | |
| 7 ## HISTOGRAM java.lang.Byte | |
| 8 QUALITY COUNT_OF_Q | |
| 9 6 704 | |
| 10 7 2044 | |
| 11 8 745 | |
| 12 9 2761 | |
| 13 10 1193 | |
| 14 11 723 | |
| 15 12 1766 | |
| 16 13 1467 | |
| 17 14 1400 | |
| 18 15 1463 | |
| 19 16 478 | |
| 20 17 831 | |
| 21 18 330 | |
| 22 19 904 | |
| 23 20 1538 | |
| 24 21 2953 | |
| 25 22 565 | |
| 26 23 4270 | |
| 27 24 1496 | |
| 28 25 5178 | |
| 29 26 3992 | |
| 30 27 3779 | |
| 31 28 3074 | |
| 32 29 2909 | |
| 33 30 19446 | |
| 34 31 3520 | |
| 35 32 13368 | |
| 36 33 9203 | |
| 37 34 22271 | |
| 38 35 24655 | |
| 39 36 64306 | |
| 40 37 38212 | |
| 41 38 95777 | |
| 42 39 67370 | |
| 43 40 36926 | |
| 44 |