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comparison picard_AddOrReplaceReadGroups.xml @ 14:465cbb0cf2eb draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 74ee0f0b594075fab7f707aaffb4a7f9dac35f2f
author devteam
date Wed, 07 Dec 2016 14:56:30 -0500
parents 7e6fd3d0f16e
children 00fe2ff64467
comparison
equal deleted inserted replaced
13:7e6fd3d0f16e 14:465cbb0cf2eb
11 @set_read_group_vars@ 11 @set_read_group_vars@
12 @java_options@ 12 @java_options@
13 @symlink_element_identifier@ 13 @symlink_element_identifier@
14 picard 14 picard
15 AddOrReplaceReadGroups 15 AddOrReplaceReadGroups
16 INPUT='$inputFile.element_identifier' 16 INPUT='$escaped_element_identifier'
17 $format_read_group("RGLB=", $rg_lb, '"') 17 $format_read_group("RGLB=", $rg_lb, '"')
18 $format_read_group("RGPL=", $rg_pl, '"') 18 $format_read_group("RGPL=", $rg_pl, '"')
19 $format_read_group("RGPU=", $rg_pu, '"') 19 $format_read_group("RGPU=", $rg_pu, '"')
20 $format_read_group("RGSM=", $rg_sm, '"') 20 $format_read_group("RGSM=", $rg_sm, '"')
21 $format_read_group("RGID=", $rg_id, '"') 21 $format_read_group("RGID=", $rg_id, '"')