comparison picard_CollectInsertSizeMetrics.xml @ 31:585027e65f3b draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 70d2a66c405be58d4413753792bcadf212a4da84

30:b502c227b5e6

<tool name="CollectInsertSizeMetrics" id="picard_CollectInsertSizeMetrics" version="@TOOL_VERSION@.@WRAPPER_VERSION@">
  <description>plots distribution of insert sizes</description>
  <macros>
    <import>picard_macros.xml</import>
    <token name="@WRAPPER_VERSION@">1</token>
  </macros>
  <expand macro="requirements">
    <requirement type="package" version="3.4.1">r-base</requirement>
  </expand>
  <command detect_errors="exit_code"><![CDATA[

    <expand macro="VS" />

  </inputs>

  <outputs>
    <data format="tabular" name="outFile"/>
    <data format="pdf" name="histFile"/>
  </outputs>

  <tests>
    <test>
      <param name="metric_accumulation_level" value="ALL_READS"/>

31:585027e65f3b

<tool name="CollectInsertSizeMetrics" id="picard_CollectInsertSizeMetrics" version="@TOOL_VERSION@.@WRAPPER_VERSION@">
  <description>plots distribution of insert sizes</description>
  <macros>
    <import>picard_macros.xml</import>
    <token name="@WRAPPER_VERSION@">2</token>
  </macros>
  <expand macro="requirements">
    <requirement type="package" version="3.4.1">r-base</requirement>
  </expand>
  <command detect_errors="exit_code"><![CDATA[

    <expand macro="VS" />

  </inputs>

  <outputs>
    <data format="tabular" name="outFile" label="${tool.name} on ${on_string}: tabular"/>
    <data format="pdf" name="histFile" label="${tool.name} on ${on_string}: PDF"/>
  </outputs>

  <tests>
    <test>
      <param name="metric_accumulation_level" value="ALL_READS"/>