Mercurial > repos > devteam > picard
comparison picard_MergeBamAlignment.xml @ 32:f9242e01365a draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 285fab1660daa944d6833ae1e059b30cb1e88309
| author | iuc |
|---|---|
| date | Mon, 25 Sep 2023 08:32:17 +0000 |
| parents | 585027e65f3b |
| children | 3f254c5ced1d |
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| 31:585027e65f3b | 32:f9242e01365a |
|---|---|
| 15 #if str( $reference_source.reference_source_selector ) == "history": | 15 #if str( $reference_source.reference_source_selector ) == "history": |
| 16 | 16 |
| 17 picard CreateSequenceDictionary REFERENCE="${ref_fasta}" OUTPUT="${picard_dict}" | 17 picard CreateSequenceDictionary REFERENCE="${ref_fasta}" OUTPUT="${picard_dict}" |
| 18 QUIET=true | 18 QUIET=true |
| 19 VERBOSITY=ERROR | 19 VERBOSITY=ERROR |
| 20 @TMPDIR_OPTION@ | |
| 21 | 20 |
| 22 && | 21 && |
| 23 | 22 |
| 24 #else: | 23 #else: |
| 25 | 24 |
| 84 VALIDATION_STRINGENCY="${validation_stringency}" | 83 VALIDATION_STRINGENCY="${validation_stringency}" |
| 85 | 84 |
| 86 SORT_ORDER=coordinate | 85 SORT_ORDER=coordinate |
| 87 QUIET=true | 86 QUIET=true |
| 88 VERBOSITY=ERROR | 87 VERBOSITY=ERROR |
| 89 @TMPDIR_OPTION@ | |
| 90 | 88 |
| 91 ]]></command> | 89 ]]></command> |
| 92 | 90 |
| 93 <inputs> | 91 <inputs> |
| 94 | 92 |