diff test-data/picard_CollectWgsMetrics_test1.tab @ 12:05087b27692a draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 7491208ca0c917a053798a48c3e54c3e30e95d92

--- a/test-data/picard_CollectWgsMetrics_test1.tab	Wed Nov 11 12:23:17 2015 -0500
+++ b/test-data/picard_CollectWgsMetrics_test1.tab	Sun Nov 27 15:11:50 2016 -0500
@@ -1,11 +1,11 @@
 ## htsjdk.samtools.metrics.StringHeader
-# picard.analysis.CollectWgsMetrics INPUT=/Users/anton/galaxy-central/database/files/000/dataset_773.dat OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_802.dat REFERENCE_SEQUENCE=localref.fa MINIMUM_MAPPING_QUALITY=20 MINIMUM_BASE_QUALITY=20 COVERAGE_CAP=250 VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT    STOP_AFTER=-1 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
+# picard.analysis.CollectWgsMetrics INPUT=/tmp/tmpOXrG6f/files/000/dataset_1.dat OUTPUT=/tmp/tmpOXrG6f/files/000/dataset_3.dat REFERENCE_SEQUENCE=localref.fa MINIMUM_MAPPING_QUALITY=20 MINIMUM_BASE_QUALITY=20 COVERAGE_CAP=250 VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT    LOCUS_ACCUMULATION_CAP=100000 STOP_AFTER=-1 INCLUDE_BQ_HISTOGRAM=false COUNT_UNPAIRED=false SAMPLE_SIZE=10000 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
 ## htsjdk.samtools.metrics.StringHeader
-# Started on: Tue Oct 07 15:46:29 EDT 2014
+# Started on: Sun Nov 27 10:15:01 CET 2016
 
 ## METRICS CLASS	picard.analysis.CollectWgsMetrics$WgsMetrics
-GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X
-16568	2.915983	3.836089	2	2	0	0	0	0	0.008069	0	0.008069	0.240464	0.055831	0.02541	0.011045	0	0	0	0	0	0	0	0	0
+GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q
+16568	2.915862	3.835741	2	2	0	0	0	0.000041	0.008069	0	0.00811	0.684633	0.240464	0.055831	0.02541	0.010985	0	0	0	0	0	0	0	0	0	0.54448	3
 
 ## HISTOGRAM	java.lang.Integer
 coverage	count
@@ -17,8 +17,8 @@
 5	1247
 6	672
 7	468
-8	361
-9	311
+8	362
+9	310
 10	210
 11	95
 12	78
@@ -28,8 +28,8 @@
 16	29
 17	31
 18	53
-19	61
-20	65
+19	62
+20	64
 21	74
 22	32
 23	12