Mercurial > repos > devteam > picard

diff picard_macros.xml @ 20:2a17c789e0a5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 5ebd6c8453b49dd6a36e372eb1eb6e323bb7ad8a
author iuc
date Tue, 19 Jun 2018 11:28:49 -0400
parents 5053a18d9bc8
children 6f9c0884a3e7
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--- a/picard_macros.xml	Mon Apr 16 21:27:29 2018 -0400
+++ b/picard_macros.xml	Tue Jun 19 11:28:49 2018 -0400
@@ -1,4 +1,6 @@
 <macros>
+    <token name="@TMPDIR_OPTION@">
+     `if [ -n "\$TMPDIR" ] ; then echo 'TMP_DIR=\$TMPDIR' ; else if [ -n "\$TEMP" ] ; then echo 'TMP_DIR=\$TEMP' ; fi ; fi`</token>
     <xml name="VS">
         <param name="validation_stringency" type="select" label="Select validation stringency" help=" Setting stringency to SILENT can improve performance when processing a BAM file in which variable-length data (read, qualities, tags) do not otherwise need to be decoded.">
           <option value="LENIENT" selected="True">Lenient</option>