diff picard_CollectAlignmentSummaryMetrics.xml @ 8:3a3234d7a2e8 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty

--- a/picard_CollectAlignmentSummaryMetrics.xml	Thu Jan 29 16:11:15 2015 -0500
+++ b/picard_CollectAlignmentSummaryMetrics.xml	Thu Jul 16 15:53:10 2015 -0400
@@ -1,13 +1,9 @@
-<tool name="Collect Alignment Summary Metrics" id="picard_CASM" version="1.126.0">
+<tool name="Collect Alignment Summary Metrics" id="picard_CASM" version="@TOOL_VERSION@.0">
   <description>writes a file containing summary alignment metrics</description>
-  <requirements>
-    <requirement type="package" version="1.126.0">picard</requirement>
-  </requirements>
-  
   <macros>
     <import>picard_macros.xml</import>
   </macros>
-  
+  <expand macro="requirements" />
   <command>
     @java_options@
     ##set up input files
@@ -55,7 +51,7 @@
         </param>
       </when>
       <when value="history">
-        <param name="ref_file" type="data" format="fasta" label="Use the folloing dataset as the reference sequence" help="REFERENCE_SEQUENCE; You can upload a FASTA sequence to the history and use it as reference" />
+        <param name="ref_file" type="data" format="fasta" label="Use the following dataset as the reference sequence" help="REFERENCE_SEQUENCE; You can upload a FASTA sequence to the history and use it as reference" />
       </when>
     </conditional>
     <param name="metric_accumulation_level" type="select" label="The level(s) at which to accumulate metrics" multiple="true" help="METRIC_ACCUMULATION_LEVEL">