Mercurial > repos > devteam > picard
diff test-data/picard_CollectGcBiasMetrics_test1.tab @ 5:3d4f1fa26f0e draft
Uploaded
| author | devteam |
|---|---|
| date | Tue, 16 Dec 2014 19:03:21 -0500 |
| parents | |
| children | 05087b27692a |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/picard_CollectGcBiasMetrics_test1.tab Tue Dec 16 19:03:21 2014 -0500 @@ -0,0 +1,48 @@ +## htsjdk.samtools.metrics.StringHeader +# picard.analysis.CollectGcBiasMetrics REFERENCE_SEQUENCE=localref.fa INPUT=/Users/anton/galaxy-central/database/files/000/dataset_616.dat OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_707.dat CHART_OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_708.dat SUMMARY_OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_706.dat WINDOW_SIZE=100 MINIMUM_GENOME_FRACTION=5.0E-5 ASSUME_SORTED=true IS_BISULFITE_SEQUENCED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false +## htsjdk.samtools.metrics.StringHeader +# Started on: Sat Oct 04 11:22:58 EDT 2014 + +## METRICS CLASS picard.analysis.GcBiasDetailMetrics +GC WINDOWS READ_STARTS MEAN_BASE_QUALITY NORMALIZED_COVERAGE ERROR_BAR_WIDTH +24 2 0 0 0 0 +25 15 0 0 0 0 +26 13 0 0 0 0 +27 18 0 0 0 0 +28 50 5 21 4.843529 2.166092 +29 47 0 0 0 0 +30 63 0 0 0 0 +31 97 4 20 1.997332 0.998666 +32 167 3 23 0.870095 0.50235 +33 178 4 22 1.088434 0.544217 +34 225 8 22 1.722144 0.60887 +35 291 5 22 0.832222 0.372181 +36 391 1 21 0.123875 0.123875 +37 506 4 24 0.382888 0.191444 +38 570 0 0 0 0 +39 640 0 0 0 0 +40 729 0 0 0 0 +41 846 1 24 0.057252 0.057252 +42 1060 1 24 0.045694 0.045694 +43 1182 13 22 0.532706 0.147746 +44 1113 8 22 0.348142 0.123087 +45 1161 7 20 0.29203 0.110377 +46 1113 5 20 0.217589 0.097309 +47 1035 8 23 0.374379 0.132363 +48 956 9 23 0.455981 0.151994 +49 913 1 24 0.053051 0.053051 +50 785 5 22 0.308505 0.137968 +51 607 5 22 0.398973 0.178426 +52 436 104 22 11.553373 1.132901 +53 354 13 23 1.778697 0.493322 +54 288 0 0 0 0 +55 232 6 21 1.252637 0.511387 +56 133 0 0 0 0 +57 108 2 24 0.89695 0.634239 +58 65 0 0 0 0 +59 38 0 0 0 0 +60 29 0 0 0 0 +61 10 0 0 0 0 +62 2 0 0 0 0 + +