diff test-data/picard_MeanQualityByCycle_test1.tab @ 5:3d4f1fa26f0e draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/picard_MeanQualityByCycle_test1.tab	Tue Dec 16 19:03:21 2014 -0500
@@ -0,0 +1,511 @@
+## htsjdk.samtools.metrics.StringHeader
+# picard.analysis.MeanQualityByCycle CHART_OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_924.dat ALIGNED_READS_ONLY=false PF_READS_ONLY=false INPUT=/Users/anton/galaxy-central/database/files/000/dataset_882.dat OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_923.dat REFERENCE_SEQUENCE=localref.fa ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT    STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
+## htsjdk.samtools.metrics.StringHeader
+# Started on: Mon Oct 13 16:54:21 EDT 2014
+
+
+## HISTOGRAM	java.lang.Integer
+CYCLE	MEAN_QUALITY
+1	30.92
+2	32.06
+3	31.93
+4	32.2
+5	32.11
+6	35.73
+7	35.77
+8	35.93
+9	34.98
+10	35.63
+11	35.38
+12	36.14
+13	37.72
+14	37.39
+15	37.27
+16	37.29
+17	37.21
+18	37.13
+19	37.28
+20	36.9
+21	37.12
+22	36.77
+23	37.81
+24	37.64
+25	38.32
+26	38.15
+27	37.97
+28	37.8
+29	37.86
+30	37.85
+31	38.21
+32	38.36
+33	38.24
+34	38.2
+35	38.04
+36	37.52
+37	37.68
+38	38.12
+39	37.46
+40	37.66
+41	37.23
+42	37.25
+43	37.28
+44	37.61
+45	37.49
+46	37.67
+47	38.02
+48	37.43
+49	37.91
+50	38.02
+51	38.01
+52	37.97
+53	37.53
+54	37.46
+55	37.83
+56	37.38
+57	37.54
+58	37.39
+59	37.69
+60	37.99
+61	37.65
+62	37.19
+63	38.03
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+65	38.06
+66	37.6
+67	37.17
+68	37.91
+69	37.51
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+75	37.3
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+80	37.23
+81	36.97
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+83	36.68
+84	36.87
+85	36.82
+86	37.47
+87	37.18
+88	37.42
+89	37.4
+90	36.42
+91	37.12
+92	37.63
+93	37.37
+94	37.38
+95	37.55
+96	37.84
+97	38.14
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+99	38.12
+100	36.51
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+105	37.4
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+115	36.44
+116	36.06
+117	37.45
+118	36.9
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+120	37.15
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+123	37.05
+124	37.34
+125	35.58
+126	36.2
+127	36.72
+128	36.17
+129	36.99
+130	36.39
+131	37.17
+132	36.61
+133	36.34
+134	36.7
+135	36.18
+136	36.07
+137	37.15
+138	36.16
+139	35.52
+140	36.35
+141	36.77
+142	35.8
+143	36.47
+144	36.07
+145	36.32
+146	36.53
+147	36.16
+148	35.99
+149	35.58
+150	35.99
+151	35.37
+152	34.34
+153	34.51
+154	35.34
+155	35.83
+156	36.26
+157	36.28
+158	36.68
+159	36.18
+160	36.44
+161	35.34
+162	34.81
+163	35.58
+164	35.72
+165	35.63
+166	36.01
+167	35.22
+168	35.82
+169	35.29
+170	35
+171	35.46
+172	34.78
+173	34.54
+174	33.67
+175	34.51
+176	34.47
+177	35.38
+178	34.74
+179	35.6
+180	34.5
+181	34.27
+182	34.26
+183	35.11
+184	34.54
+185	33.99
+186	33.22
+187	33.8
+188	33.43
+189	34.4
+190	32.97
+191	33.59
+192	33.29
+193	32.52
+194	34.05
+195	33.54
+196	32.56
+197	33.88
+198	33.03
+199	32.74
+200	31.84
+201	33.09
+202	32.95
+203	32.85
+204	33.79
+205	33.35
+206	33.05
+207	32.71
+208	32.83
+209	32.76
+210	31.26
+211	31.29
+212	32.19
+213	33.79
+214	33.22
+215	32.27
+216	32.03
+217	31.8
+218	32.67
+219	32.57
+220	32.32
+221	31.24
+222	31.27
+223	31.22
+224	31.59
+225	30.77
+226	30.36
+227	30.66
+228	30.16
+229	30.91
+230	32.04
+231	32.24
+232	32.04
+233	30.92
+234	30.78
+235	31.59
+236	31.73
+237	32.32
+238	30.25
+239	29.03
+240	29.61
+241	30.03
+242	29.38
+243	28.82
+244	29.32
+245	28.41
+246	28.49
+247	29.24
+248	29.71
+249	29.51
+250	28.9
+251	20.13
+252	32.02
+253	33.03
+254	33.14
+255	33.32
+256	32.92
+257	35.86
+258	36.02
+259	35.97
+260	35.76
+261	36.03
+262	35.9
+263	36.35
+264	37.5
+265	37.28
+266	37.61
+267	37.7
+268	37.66
+269	37.48
+270	37.68
+271	37.59
+272	37.66
+273	37.73
+274	38.05
+275	38.42
+276	38.12
+277	38.37
+278	38.41
+279	38.32
+280	38.39
+281	38.2
+282	38.26
+283	38.34
+284	38.22
+285	38.37
+286	38.33
+287	38.39
+288	38.17
+289	38.1
+290	38.16
+291	37.86
+292	37.77
+293	38.23
+294	37.79
+295	37.64
+296	38.02
+297	37.77
+298	38.2
+299	38.02
+300	37.83
+301	38.26
+302	38.2
+303	38.04
+304	37.86
+305	38.14
+306	38.25
+307	37.88
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+309	38.3
+310	37.82
+311	37.71
+312	38.23
+313	38.07
+314	38.06
+315	37.71
+316	37.92
+317	37.78
+318	37.89
+319	37.37
+320	37.2
+321	37.59
+322	37.88
+323	37.35
+324	37.8
+325	37.11
+326	37.34
+327	36.97
+328	37.34
+329	37.27
+330	37.6
+331	37.4
+332	37.31
+333	37.57
+334	37.12
+335	37.46
+336	37.45
+337	37.47
+338	37.27
+339	37.62
+340	37.6
+341	37.78
+342	37.51
+343	37.81
+344	37.92
+345	37.86
+346	37.22
+347	37.75
+348	37.5
+349	37.12
+350	37.2
+351	36.71
+352	37.26
+353	37.27
+354	37.96
+355	38
+356	37.49
+357	37.61
+358	36.68
+359	37.02
+360	37.23
+361	36.35
+362	36.78
+363	36.51
+364	36.98
+365	36.74
+366	36.98
+367	36.4
+368	36.89
+369	37.09
+370	36.85
+371	36.94
+372	37.03
+373	37.27
+374	36.99
+375	37.22
+376	36.68
+377	37.01
+378	37.16
+379	36.63
+380	37.02
+381	36.7
+382	37.36
+383	36.97
+384	36.61
+385	36.4
+386	36.31
+387	36.38
+388	36.57
+389	36.17
+390	35.9
+391	36.52
+392	36.31
+393	35.73
+394	35.6
+395	35.14
+396	35.58
+397	34.47
+398	36.4
+399	36.35
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+401	35.94
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+404	34.94
+405	35.2
+406	35.3
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+411	35.12
+412	34.92
+413	35.04
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+416	35.41
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+418	34.93
+419	34.61
+420	31.67
+421	33.03
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+423	33.21
+424	34.64
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+426	33.68
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+431	33.3
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+433	34.35
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+456	29.87
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+460	29.87
+461	30.61
+462	30.39
+463	30.65
+464	28.86
+465	28.55
+466	28.77
+467	30
+468	30.1
+469	30.27
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+473	29.87
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+