view test-data/picard_CollectGcBiasMetrics_test1.tab @ 15:00fe2ff64467 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit f65b40f4eb3c3431b8d9213f86238deebfd6bc29
author devteam
date Thu, 08 Dec 2016 06:43:38 -0500
parents 05087b27692a
children 5053a18d9bc8
line wrap: on
line source

## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectGcBiasMetrics CHART_OUTPUT=/tmp/tmp_TYiPX/files/000/dataset_5.dat SUMMARY_OUTPUT=/tmp/tmp_TYiPX/files/000/dataset_3.dat SCAN_WINDOW_SIZE=100 MINIMUM_GENOME_FRACTION=5.0E-5 IS_BISULFITE_SEQUENCED=true INPUT=/tmp/tmp_TYiPX/files/000/dataset_1.dat OUTPUT=/tmp/tmp_TYiPX/files/000/dataset_4.dat ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT REFERENCE_SEQUENCE=localref.fa    METRIC_ACCUMULATION_LEVEL=[ALL_READS] STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
## htsjdk.samtools.metrics.StringHeader
# Started on: Sun Nov 27 10:39:24 CET 2016

## METRICS CLASS	picard.analysis.GcBiasDetailMetrics
ACCUMULATION_LEVEL	GC	WINDOWS	READ_STARTS	MEAN_BASE_QUALITY	NORMALIZED_COVERAGE	ERROR_BAR_WIDTH	SAMPLE	LIBRARY	READ_GROUP
All Reads	0	0	118	20	0	0			
All Reads	1	0	0	0	0	0			
All Reads	2	0	0	0	0	0			
All Reads	3	0	0	0	0	0			
All Reads	4	0	0	0	0	0			
All Reads	5	0	0	0	0	0			
All Reads	6	0	0	0	0	0			
All Reads	7	0	0	0	0	0			
All Reads	8	0	0	0	0	0			
All Reads	9	0	0	0	0	0			
All Reads	10	0	0	0	0	0			
All Reads	11	0	0	0	0	0			
All Reads	12	0	0	0	0	0			
All Reads	13	0	0	0	0	0			
All Reads	14	0	0	0	0	0			
All Reads	15	0	0	0	0	0			
All Reads	16	0	0	0	0	0			
All Reads	17	0	0	0	0	0			
All Reads	18	0	0	0	0	0			
All Reads	19	0	0	0	0	0			
All Reads	20	0	0	0	0	0			
All Reads	21	0	0	0	0	0			
All Reads	22	0	0	0	0	0			
All Reads	23	0	0	0	0	0			
All Reads	24	2	0	0	0	0			
All Reads	25	15	0	0	0	0			
All Reads	26	13	0	0	0	0			
All Reads	27	18	0	0	0	0			
All Reads	28	50	5	21	4.843529	2.166092			
All Reads	29	47	0	0	0	0			
All Reads	30	63	0	0	0	0			
All Reads	31	97	4	20	1.997332	0.998666			
All Reads	32	167	3	23	0.870095	0.50235			
All Reads	33	178	4	22	1.088434	0.544217			
All Reads	34	225	8	22	1.722144	0.60887			
All Reads	35	291	5	22	0.832222	0.372181			
All Reads	36	391	1	21	0.123875	0.123875			
All Reads	37	506	4	24	0.382888	0.191444			
All Reads	38	570	0	0	0	0			
All Reads	39	640	0	0	0	0			
All Reads	40	729	0	0	0	0			
All Reads	41	846	1	24	0.057252	0.057252			
All Reads	42	1060	1	24	0.045694	0.045694			
All Reads	43	1182	13	22	0.532706	0.147746			
All Reads	44	1113	8	22	0.348142	0.123087			
All Reads	45	1161	7	20	0.29203	0.110377			
All Reads	46	1113	5	20	0.217589	0.097309			
All Reads	47	1035	8	23	0.374379	0.132363			
All Reads	48	956	9	23	0.455981	0.151994			
All Reads	49	913	1	24	0.053051	0.053051			
All Reads	50	785	5	22	0.308505	0.137968			
All Reads	51	607	5	22	0.398973	0.178426			
All Reads	52	436	104	22	11.553373	1.132901			
All Reads	53	354	13	23	1.778697	0.493322			
All Reads	54	288	0	0	0	0			
All Reads	55	232	6	21	1.252637	0.511387			
All Reads	56	133	0	0	0	0			
All Reads	57	108	2	24	0.89695	0.634239			
All Reads	58	65	0	0	0	0			
All Reads	59	38	0	0	0	0			
All Reads	60	29	0	0	0	0			
All Reads	61	10	0	0	0	0			
All Reads	62	2	0	0	0	0			
All Reads	63	0	0	0	0	0			
All Reads	64	0	0	0	0	0			
All Reads	65	0	0	0	0	0			
All Reads	66	0	0	0	0	0			
All Reads	67	0	0	0	0	0			
All Reads	68	0	0	0	0	0			
All Reads	69	0	0	0	0	0			
All Reads	70	0	0	0	0	0			
All Reads	71	0	0	0	0	0			
All Reads	72	0	0	0	0	0			
All Reads	73	0	0	0	0	0			
All Reads	74	0	0	0	0	0			
All Reads	75	0	0	0	0	0			
All Reads	76	0	0	0	0	0			
All Reads	77	0	0	0	0	0			
All Reads	78	0	0	0	0	0			
All Reads	79	0	0	0	0	0			
All Reads	80	0	0	0	0	0			
All Reads	81	0	0	0	0	0			
All Reads	82	0	0	0	0	0			
All Reads	83	0	0	0	0	0			
All Reads	84	0	0	0	0	0			
All Reads	85	0	0	0	0	0			
All Reads	86	0	0	0	0	0			
All Reads	87	0	0	0	0	0			
All Reads	88	0	0	0	0	0			
All Reads	89	0	0	0	0	0			
All Reads	90	0	0	0	0	0			
All Reads	91	0	0	0	0	0			
All Reads	92	0	0	0	0	0			
All Reads	93	0	0	0	0	0			
All Reads	94	0	0	0	0	0			
All Reads	95	0	0	0	0	0			
All Reads	96	0	0	0	0	0			
All Reads	97	0	0	0	0	0			
All Reads	98	0	0	0	0	0			
All Reads	99	0	0	0	0	0			
All Reads	100	0	0	0	0	0