Mercurial > repos > devteam > pileup_interval
comparison pileup_interval.xml @ 3:ef11139d4545 draft
planemo upload commit 00a7926c285bc4a339bd7deebf40b28f39c7d947
| author | devteam |
|---|---|
| date | Tue, 21 Jul 2015 15:40:07 -0400 |
| parents | 0b4181be05c8 |
| children | 9c1c0b947e46 |
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| 2:0b4181be05c8 | 3:ef11139d4545 |
|---|---|
| 1 <tool id="pileup_interval" name="Pileup-to-Interval" version="1.0.1"> | 1 <tool id="pileup_interval" name="Pileup-to-Interval" version="1.0.2"> |
| 2 <description>condenses pileup format into ranges of bases</description> | 2 <description>condenses pileup format into ranges of bases</description> |
| 3 <requirements> | |
| 4 <requirement type="package" version="0.1.19">samtools</requirement> | |
| 5 </requirements> | |
| 6 <command interpreter="python"> | 3 <command interpreter="python"> |
| 7 pileup_interval.py | 4 pileup_interval.py |
| 8 --input=$input | 5 --input=$input |
| 9 --output=$output | 6 --output=$output |
| 10 --coverage=$coverage | 7 --coverage=$coverage |
| 182 2 Starting position (0-based) | 179 2 Starting position (0-based) |
| 183 3 Ending position (1-based) | 180 3 Ending position (1-based) |
| 184 4 Sequence of bases | 181 4 Sequence of bases |
| 185 | 182 |
| 186 </help> | 183 </help> |
| 187 <citations> | |
| 188 <citation type="doi">10.1093/bioinformatics/btp352</citation> | |
| 189 </citations> | |
| 190 | |
| 191 </tool> | 184 </tool> |
| 192 | |
| 193 |