# HG changeset patch
# User devteam
# Date 1401813639 14400
# Node ID 1670f05650001800a9b2b18b6a5530ce12f3d331
# Parent  ff1ba9b75337af771f42d10f1d23972b4eb1bda0
Uploaded tool help images.

diff -r ff1ba9b75337 -r 1670f0565000 pileup_parser.xml
--- a/pileup_parser.xml	Mon Aug 26 15:14:34 2013 -0400
+++ b/pileup_parser.xml	Tue Jun 03 12:40:39 2014 -0400
@@ -320,7 +320,7 @@
  
 To call all variants (with no restriction by coverage) with quality above phred value of 20, we will need to set the parameters as follows:
 
-.. image:: ${static_path}/images/pileup_parser_help1.png 
+.. image:: pileup_parser_help1.png 
 
 Running the tool with these parameters will return::
 
@@ -336,7 +336,7 @@
 
 In addition to calling variants, it is often useful to know the quality adjusted coverage. Running the tool with these parameters:
 
-.. image:: ${static_path}/images/pileup_parser_help2.png 
+.. image:: pileup_parser_help2.png 
 
 will report everything from the original file::
 
@@ -355,7 +355,7 @@
 
 If you set the **Print total number of differences?** to **Yes** the tool will print an additional column with the total number of reads where a devinat base is above the quality threshold. So, seetiing parametrs like this:
 
-.. image:: ${static_path}/images/pileup_parser_help3.png
+.. image:: pileup_parser_help3.png
 
 will produce this::
 
@@ -371,7 +371,7 @@
 
 Setting **Print quality and base string?** to **Yes** as shown here:
 
-.. image:: ${static_path}/images/pileup_parser_help4.png
+.. image:: pileup_parser_help4.png
 
 will produce this::
 
diff -r ff1ba9b75337 -r 1670f0565000 pileup_parser_help1.png
Binary file pileup_parser_help1.png has changed
diff -r ff1ba9b75337 -r 1670f0565000 pileup_parser_help2.png
Binary file pileup_parser_help2.png has changed
diff -r ff1ba9b75337 -r 1670f0565000 pileup_parser_help3.png
Binary file pileup_parser_help3.png has changed
diff -r ff1ba9b75337 -r 1670f0565000 pileup_parser_help4.png
Binary file pileup_parser_help4.png has changed