Mercurial > repos > devteam > quality_filter

changeset 1:64f5401327e8 draft

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Uploaded tool definition that does not fail on stderr output.
author devteam
date Thu, 30 Oct 2014 15:40:05 -0400
parents 8d65bbc52dfe
children 6c6f15373f96
files quality_filter.xml
diffstat 1 files changed, 3 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/quality_filter.xml	Tue Apr 01 10:52:42 2014 -0400
+++ b/quality_filter.xml	Thu Oct 30 15:40:05 2014 -0400
@@ -22,6 +22,9 @@
 	#end if
   	${GALAXY_DATA_INDEX_DIR}/quality_scores.loc
   </command>
+  <stdio>
+    <exit_code range="1:" level="fatal" description="Error" />
+  </stdio>
   <inputs>
     <param format="maf" name="input" type="data" label="Select data"/>
     <param name="primary_species" type="select" label="Use quality scores of" display="checkboxes" multiple="true">