Mercurial > repos > devteam > rmapq
comparison rmapq_wrapper.xml @ 1:3a48f010da67 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/rmapq commit a1517c9d22029095120643bbe2c8fa53754dd2b7
| author | devteam |
|---|---|
| date | Wed, 11 Nov 2015 12:25:20 -0500 |
| parents | f6e5bb5aa2f5 |
| children |
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| 0:f6e5bb5aa2f5 | 1:3a48f010da67 |
|---|---|
| 17 <column name="value" index="0"/> | 17 <column name="value" index="0"/> |
| 18 </options> | 18 </options> |
| 19 </param> | 19 </param> |
| 20 <param name="input_seq" type="data" format="fasta" label="Sequence file"/> | 20 <param name="input_seq" type="data" format="fasta" label="Sequence file"/> |
| 21 <param name="input_score" type="data" format="qualsolexa" label="Quality score file"/> | 21 <param name="input_score" type="data" format="qualsolexa" label="Quality score file"/> |
| 22 <param name="high_score" type="float" size="15" value="40" label="Minimum score for high-quality base (-q)"/> | 22 <param name="high_score" type="float" value="40" label="Minimum score for high-quality base (-q)"/> |
| 23 <param name="high_len" type="integer" size="15" value="36" label="Minimal high-quality bases (-M)"/> | 23 <param name="high_len" type="integer" value="36" label="Minimal high-quality bases (-M)"/> |
| 24 <param name="align_len" type="integer" size="15" value="11" label="Minimal length of a hit (-h)" help="seed"/> | 24 <param name="align_len" type="integer" value="11" label="Minimal length of a hit (-h)" help="seed"/> |
| 25 <param name="mismatch" type="select" label="Number of mismatches allowed (-m)"> | 25 <param name="mismatch" type="select" label="Number of mismatches allowed (-m)"> |
| 26 <option value="0">0</option> | 26 <option value="0">0</option> |
| 27 <option value="1">1</option> | 27 <option value="1">1</option> |
| 28 <option value="3">3</option> | 28 <option value="3">3</option> |
| 29 <option value="5">5</option> | 29 <option value="5">5</option> |
| 34 <option value="Yes">Yes</option> | 34 <option value="Yes">Yes</option> |
| 35 </param> | 35 </param> |
| 36 <when value="No"> | 36 <when value="No"> |
| 37 </when> | 37 </when> |
| 38 <when value="Yes"> | 38 <when value="Yes"> |
| 39 <param name="read_len" type="integer" size="15" value="36" label="Read length (-w)" /> | 39 <param name="read_len" type="integer" value="36" label="Read length (-w)" /> |
| 40 </when> | 40 </when> |
| 41 </conditional> | 41 </conditional> |
| 42 </inputs> | 42 </inputs> |
| 43 <outputs> | 43 <outputs> |
| 44 <data name="output1" format="bed"/> | 44 <data name="output1" format="bed"/> |