Mercurial > repos > devteam > sam_pileup
comparison sam_pileup.xml @ 2:3ff8935743a9 draft
Remove unused flags from tool wrapper XML.
author | devteam |
---|---|
date | Thu, 09 Jan 2014 14:22:45 -0500 |
parents | e7d863c5c5d6 |
children | a3b4ad6858ff |
comparison
equal
deleted
inserted
replaced
1:e7d863c5c5d6 | 2:3ff8935743a9 |
---|---|
11 #if $refOrHistory.reference == "history": | 11 #if $refOrHistory.reference == "history": |
12 --ownFile=$refOrHistory.ownFile | 12 --ownFile=$refOrHistory.ownFile |
13 #else: | 13 #else: |
14 --index=${refOrHistory.index.fields.path} | 14 --index=${refOrHistory.index.fields.path} |
15 #end if | 15 #end if |
16 --dbkey=${input1.metadata.dbkey} | |
17 --indexDir=${GALAXY_DATA_INDEX_DIR} | |
18 --bamIndex=${input1.metadata.bam_index} | 16 --bamIndex=${input1.metadata.bam_index} |
19 --lastCol=$lastCol | 17 --lastCol=$lastCol |
20 --indels=$indels | 18 --indels=$indels |
21 --mapCap=$mapCap | 19 --mapCap=$mapCap |
22 --consensus=$c.consensus | 20 --consensus=$c.consensus |