comparison sam_to_bam.xml @ 5:c73bf16b45df draft

Uploaded

4:8176b2575aa1

This tool uses the SAMTools_ toolkit to produce an indexed BAM file based on a sorted input SAM file.

.. _SAMTools: http://samtools.sourceforge.net/samtools.shtml

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**Citation**

For the underlying tool, please cite `Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009 Aug 15;25(16):2078-9. <http://www.ncbi.nlm.nih.gov/pubmed/19505943>`_

  </help>
</tool>

5:c73bf16b45df

This tool uses the SAMTools_ toolkit to produce an indexed BAM file based on a sorted input SAM file.

.. _SAMTools: http://samtools.sourceforge.net/samtools.shtml

  </help>
    <citations>
        <citation type="doi">10.1093/bioinformatics/btp352</citation>
    </citations>
</tool>