Mercurial > repos > devteam > sam_to_bam
changeset 5:c73bf16b45df draft
Uploaded
| author | devteam |
|---|---|
| date | Thu, 05 Mar 2015 21:28:25 -0500 |
| parents | 8176b2575aa1 |
| children | d04d9f1c6791 |
| files | sam_to_bam.xml tool_dependencies.xml |
| diffstat | 2 files changed, 4 insertions(+), 7 deletions(-) [+] |
line wrap: on
line diff
--- a/sam_to_bam.xml Thu Mar 27 15:23:15 2014 -0400 +++ b/sam_to_bam.xml Thu Mar 05 21:28:25 2015 -0500 @@ -92,11 +92,8 @@ .. _SAMTools: http://samtools.sourceforge.net/samtools.shtml ------- - -**Citation** - -For the underlying tool, please cite `Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009 Aug 15;25(16):2078-9. <http://www.ncbi.nlm.nih.gov/pubmed/19505943>`_ - </help> + <citations> + <citation type="doi">10.1093/bioinformatics/btp352</citation> + </citations> </tool>
--- a/tool_dependencies.xml Thu Mar 27 15:23:15 2014 -0400 +++ b/tool_dependencies.xml Thu Mar 05 21:28:25 2015 -0500 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="samtools" version="0.1.19"> - <repository changeset_revision="1ef76f8d8e52" name="package_samtools_0_1_19" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="95d2c4aefb5f" name="package_samtools_0_1_19" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency>