# HG changeset patch
# User devteam
# Date 1469646989 14400
# Node ID d3292b4a0c7854ce973089e7c01d745fcc89a14c
# Parent  c31a37f6d48a7abaa579a992a9b0e1fac94f584b
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/samtool_filter2 commit 47865f133813c9e61ffc63d70aad1ff782c645ac

diff -r c31a37f6d48a -r d3292b4a0c78 samtool_filter2.xml
--- a/samtool_filter2.xml	Thu Mar 17 11:39:47 2016 -0400
+++ b/samtool_filter2.xml	Wed Jul 27 15:16:29 2016 -0400
@@ -94,6 +94,7 @@
           <option value="0x0100">The alignment or this read is not primary</option>
           <option value="0x0200">The read fails platform/vendor quality checks</option>
           <option value="0x0400">The read is a PCR or optical duplicate</option>
+          <option value="0x0800">Supplementary alignment</option>
         </param>
         <param name="skipBits" type="select" multiple="true" display="checkboxes" label="Skip alignments with any of these flag bits set" help="(-F)">
           <option value="0x0001">Read is paired</option>
@@ -107,6 +108,7 @@
           <option value="0x0100">The alignment or this read is not primary</option>
           <option value="0x0200">The read fails platform/vendor quality checks</option>
           <option value="0x0400">The read is a PCR or optical duplicate</option>
+          <option value="0x0800">Supplementary alignment</option>
         </param>
       </when>
     </conditional>