Mercurial > repos > devteam > samtools_calmd
comparison samtools_calmd.xml @ 6:92ec40abcdcf draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_calmd commit c5ded4208dd70e88596ddc725795a2401773f02d"
| author | iuc |
|---|---|
| date | Sat, 27 Nov 2021 12:32:14 +0000 |
| parents | c147e3a10573 |
| children | c89806670ab9 |
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| 5:c147e3a10573 | 6:92ec40abcdcf |
|---|---|
| 16 $option_set.change_identical -C $option_set.adjust_mq | 16 $option_set.change_identical -C $option_set.adjust_mq |
| 17 #end if | 17 #end if |
| 18 -b | 18 -b |
| 19 -@ \$addthreads | 19 -@ \$addthreads |
| 20 '$input' | 20 '$input' |
| 21 '$reffa' | 21 "\$reffa" |
| 22 > '$calmd_output' | 22 > '$calmd_output' |
| 23 ]]></command> | 23 ]]></command> |
| 24 <inputs> | 24 <inputs> |
| 25 <param name="input" type="data" format="bam" label="BAM file to recalculate" /> | 25 <param name="input" type="data" format="bam" label="BAM file to recalculate" /> |
| 26 <expand macro="mandatory_reference"/> | 26 <expand macro="mandatory_reference"/> |