Mercurial > repos > devteam > samtools_flagstat
diff test-data/samtools_flagstat_out1.tsv @ 7:fe34990e5ce7 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
| author | iuc |
|---|---|
| date | Tue, 28 Sep 2021 16:13:41 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/samtools_flagstat_out1.tsv Tue Sep 28 16:13:41 2021 +0000 @@ -0,0 +1,20 @@ +200 0 total (QC-passed reads + QC-failed reads) +200 0 primary +0 0 secondary +0 0 supplementary +0 0 duplicates +0 0 primary duplicates +25 0 mapped +12.50% N/A mapped % +25 0 primary mapped +12.50% N/A primary mapped % +200 0 paired in sequencing +100 0 read1 +100 0 read2 +0 0 properly paired +0.00% N/A properly paired % +0 0 with itself and mate mapped +25 0 singletons +12.50% N/A singletons % +0 0 with mate mapped to a different chr +0 0 with mate mapped to a different chr (mapQ>=5)