Mercurial > repos > devteam > samtools_flagstat
view test-data/samtools_flagstat_out1.tsv @ 11:a0d8e49a018c draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/samtools/samtools_flagstat commit bfe97d9abaf5d56412b48b5a011f1c4337fa5118-dirty
| author | iuc |
|---|---|
| date | Wed, 12 Nov 2025 12:58:16 +0000 |
| parents | fe34990e5ce7 |
| children |
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200 0 total (QC-passed reads + QC-failed reads) 200 0 primary 0 0 secondary 0 0 supplementary 0 0 duplicates 0 0 primary duplicates 25 0 mapped 12.50% N/A mapped % 25 0 primary mapped 12.50% N/A primary mapped % 200 0 paired in sequencing 100 0 read1 100 0 read2 0 0 properly paired 0.00% N/A properly paired % 0 0 with itself and mate mapped 25 0 singletons 12.50% N/A singletons % 0 0 with mate mapped to a different chr 0 0 with mate mapped to a different chr (mapQ>=5)