view test-data/samtools_flagstat_out1.txt @ 7:fe34990e5ce7 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 0f75269223c0821c6c82acf98fde947d0f816f2b"

200 + 0 in total (QC-passed reads + QC-failed reads)
200 + 0 primary
0 + 0 secondary
0 + 0 supplementary
0 + 0 duplicates
0 + 0 primary duplicates
25 + 0 mapped (12.50% : N/A)
25 + 0 primary mapped (12.50% : N/A)
200 + 0 paired in sequencing
100 + 0 read1
100 + 0 read2
0 + 0 properly paired (0.00% : N/A)
0 + 0 with itself and mate mapped
25 + 0 singletons (12.50% : N/A)
0 + 0 with mate mapped to a different chr
0 + 0 with mate mapped to a different chr (mapQ>=5)