# HG changeset patch
# User iuc
# Date 1564404526 14400
# Node ID 811fc2d75ad46eb6e859e0c8b5827e34f781f840
# Parent  04d5581db1f51bc30ceee0ae42705aaee1766aa2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_idxstats commit ca0d1d44099fd21e0f8214102f4d8a2fd2d054d6

diff -r 04d5581db1f5 -r 811fc2d75ad4 samtools_idxstats.xml
--- a/samtools_idxstats.xml	Thu Sep 27 09:03:08 2018 -0400
+++ b/samtools_idxstats.xml	Mon Jul 29 08:48:46 2019 -0400
@@ -7,8 +7,9 @@
     <expand macro="stdio"/>
     <expand macro="version_command"/>
     <command><![CDATA[
-        @PREPARE_IDX@
-        samtools idxstats infile > '${output}'
+@ADDTHREADS@
+@PREPARE_IDX@
+samtools idxstats -@ \$addthreads infile  > '${output}'
     ]]></command>
     <inputs>
         <param name="input" type="data" format="bam,cram" label="BAM file" />