Mercurial > repos > devteam > samtools_mpileup
comparison samtools_mpileup.xml @ 12:329deb17a9f7 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_mpileup commit c5ded4208dd70e88596ddc725795a2401773f02d"
| author | iuc |
|---|---|
| date | Sat, 27 Nov 2021 12:32:35 +0000 |
| parents | 111f83918fe6 |
| children | 9da0311ab1dd |
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| 11:111f83918fe6 | 12:329deb17a9f7 |
|---|---|
| 11 #set $input_bams = $input | 11 #set $input_bams = $input |
| 12 @PREPARE_IDX_MULTIPLE@ | 12 @PREPARE_IDX_MULTIPLE@ |
| 13 @PREPARE_FASTA_IDX@ | 13 @PREPARE_FASTA_IDX@ |
| 14 | 14 |
| 15 samtools mpileup | 15 samtools mpileup |
| 16 -f '$reffa' | 16 -f "\$reffa" |
| 17 #for $i in range(len( $input_bams )): | 17 #for $i in range(len( $input_bams )): |
| 18 '${i}' | 18 '${i}' |
| 19 #end for | 19 #end for |
| 20 | 20 |
| 21 #if str( $advanced_options.advanced_options_selector ) == "advanced": | 21 #if str( $advanced_options.advanced_options_selector ) == "advanced": |