Mercurial > repos > devteam > samtools_mpileup
comparison samtools_mpileup.xml @ 6:820754ab8901 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_mpileup commit 231882293cdd5214decddfe093612431793fdb6b-dirty
| author | devteam |
|---|---|
| date | Tue, 20 Oct 2015 16:24:54 -0400 |
| parents | aa0ef6f0ee89 |
| children | bfc4517aa037 |
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| 5:aa0ef6f0ee89 | 6:820754ab8901 |
|---|---|
| 1 <tool id="samtools_mpileup" name="MPileup" version="2.0"> | 1 <tool id="samtools_mpileup" name="MPileup" version="2.1"> |
| 2 <description>call variants</description> | 2 <description>call variants</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
| 57 | 57 |
| 58 ${genotype_likelihood_computation_type.output_format} | 58 ${genotype_likelihood_computation_type.output_format} |
| 59 ${genotype_likelihood_computation_type.compressed} | 59 ${genotype_likelihood_computation_type.compressed} |
| 60 | 60 |
| 61 #if str( $genotype_likelihood_computation_type.output_tags ) != "None": | 61 #if str( $genotype_likelihood_computation_type.output_tags ) != "None": |
| 62 -output-tags "${genotype_likelihood_computation_type.output_tags}" | 62 --output-tags "${genotype_likelihood_computation_type.output_tags}" |
| 63 #end if | 63 #end if |
| 64 | 64 |
| 65 #if str( $genotype_likelihood_computation_type.perform_indel_calling.perform_indel_calling_selector ) == 'perform_indel_calling': | 65 #if str( $genotype_likelihood_computation_type.perform_indel_calling.perform_indel_calling_selector ) == 'perform_indel_calling': |
| 66 -o "${genotype_likelihood_computation_type.perform_indel_calling.gap_open_sequencing_error_probability}" | 66 -o "${genotype_likelihood_computation_type.perform_indel_calling.gap_open_sequencing_error_probability}" |
| 67 -e "${genotype_likelihood_computation_type.perform_indel_calling.gap_extension_sequencing_error_probability}" | 67 -e "${genotype_likelihood_computation_type.perform_indel_calling.gap_extension_sequencing_error_probability}" |