Mercurial > repos > devteam > samtools_mpileup
diff test-data/samtools_mpileup_out_2.vcf @ 8:583abf29fc8e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_mpileup commit 411130b45dc30f7f24f41cdeec5e148c5d8faf40
| author | iuc |
|---|---|
| date | Tue, 09 May 2017 11:17:20 -0400 |
| parents | c6fdfe3331d6 |
| children |
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--- a/test-data/samtools_mpileup_out_2.vcf Wed Nov 11 12:53:32 2015 -0500 +++ b/test-data/samtools_mpileup_out_2.vcf Tue May 09 11:17:20 2017 -0400 @@ -4,7 +4,7 @@ ##samtoolsCommand=samtools mpileup --VCF --uncompressed -f /tmp/tmpId8vOP/tmp3bubIE/database/files/000/dataset_735.dat -g -e 20 -h 100 -L 250 -m 1 --open-prob 40 -F 0.002 -e 40 --output /tmp/tmpId8vOP/tmp3bubIE/database/files/000/dataset_736.dat /tmp/tmpId8vOP/tmp3bubIE/database/files/000/dataset_734.dat ##reference=file:///tmp/tmpId8vOP/tmp3bubIE/database/files/000/dataset_735.dat ##contig=<ID=phiX174,length=5386> -##ALT=<ID=X,Description="Represents allele(s) other than observed."> +##ALT=<ID=*,Description="Represents allele(s) other than observed."> ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL."> ##INFO=<ID=IDV,Number=1,Type=Integer,Description="Maximum number of reads supporting an indel"> ##INFO=<ID=IMF,Number=1,Type=Float,Description="Maximum fraction of reads supporting an indel"> @@ -19,4 +19,4 @@ ##INFO=<ID=I16,Number=16,Type=Float,Description="Auxiliary tag used for calling, see description of bcf_callret1_t in bam2bcf.h"> ##INFO=<ID=QS,Number=R,Type=Float,Description="Auxiliary tag used for calling"> ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods"> -#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT /tmp/tmpId8vOP/tmp3bubIE/database/files/000/dataset_734.dat +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT localbam_0.bam