# HG changeset patch
# User devteam
# Date 1445372694 14400
# Node ID 820754ab8901af9c78f5211cece3c3ec8d91473d
# Parent  aa0ef6f0ee89ae64f39ce4f45aeebaeef1a65ef1
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_mpileup commit 231882293cdd5214decddfe093612431793fdb6b-dirty

diff -r aa0ef6f0ee89 -r 820754ab8901 samtools_mpileup.xml
--- a/samtools_mpileup.xml	Fri May 08 16:51:29 2015 -0400
+++ b/samtools_mpileup.xml	Tue Oct 20 16:24:54 2015 -0400
@@ -1,4 +1,4 @@
-<tool id="samtools_mpileup" name="MPileup" version="2.0">
+<tool id="samtools_mpileup" name="MPileup" version="2.1">
     <description>call variants</description>
     <macros>
         <import>macros.xml</import>
@@ -59,7 +59,7 @@
         ${genotype_likelihood_computation_type.compressed}
         
         #if str( $genotype_likelihood_computation_type.output_tags ) != "None":
-            -output-tags "${genotype_likelihood_computation_type.output_tags}"
+            --output-tags "${genotype_likelihood_computation_type.output_tags}"
         #end if
 
         #if str( $genotype_likelihood_computation_type.perform_indel_calling.perform_indel_calling_selector ) == 'perform_indel_calling':
diff -r aa0ef6f0ee89 -r 820754ab8901 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri May 08 16:51:29 2015 -0400
+++ b/tool_dependencies.xml	Tue Oct 20 16:24:54 2015 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="samtools" version="1.2">
-        <repository changeset_revision="6eea04363026" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>