changeset 11:111f83918fe6 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_mpileup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
author iuc
date Tue, 28 Sep 2021 16:15:20 +0000
parents 8da515fbc1bf
children 329deb17a9f7
files macros.xml samtools_mpileup.xml test-data/mpileup.out.1 test-data/mpileup.out.4 test-data/samtools_mpileup_out_3.pileup
diffstat 5 files changed, 4307 insertions(+), 163 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Tue Sep 21 09:33:51 2021 +0000
+++ b/macros.xml	Tue Sep 28 16:15:20 2021 +0000
@@ -5,10 +5,16 @@
             <yield/>
         </requirements>
     </xml>
-    <token name="@TOOL_VERSION@">1.9</token>
-    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@TOOL_VERSION@">1.13</token>
+    <token name="@PROFILE@">20.05</token>
+    <token name="@FLAGS@"><![CDATA[
+        #set $flags = 0
+        #if $filter
+            #set $flags = sum(map(int, str($filter).split(',')))
+        #end if
+    ]]></token>
     <token name="@PREPARE_IDX@"><![CDATA[
-        ##prepare input and indices 
+        ##prepare input and indices
         ln -s '$input' infile &&
         #if $input.is_of_type('bam'):
             #if str( $input.metadata.bam_index ) != "None":
@@ -25,7 +31,7 @@
         #end if
     ]]></token>
     <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
-        ##prepare input and indices 
+        ##prepare input and indices
         #for $i, $bam in enumerate( $input_bams ):
             ln -s '$bam' '${i}' &&
             #if $bam.is_of_type('bam'):
@@ -63,6 +69,51 @@
             #set reffai=None
         #end if
     ]]></token>
+
+    <xml name="optional_reference">
+        <conditional name="addref_cond">
+            <param name="addref_select" type="select" label="Use a reference sequence">
+                <help>@HELP@</help>
+                <option value="no">No</option>
+                <option value="history">Use a genome/index from the history</option>
+                <option value="cached">Use a built-in genome</option>
+            </param>
+            <when value="no"/>
+            <when value="history">
+                <param name="ref" argument="@ARGUMENT@" type="data" format="fasta,fasta.gz" label="Reference"/>
+            </when>
+            <when value="cached">
+                <param name="ref" argument="@ARGUMENT@" type="select" label="Reference">
+                    <options from_data_table="fasta_indexes">
+                        <filter type="data_meta" ref="input" key="dbkey" column="dbkey"/>
+                    </options>
+                    <validator  type="no_options" message="No reference genome is available for the build associated with the selected input dataset"/>
+                </param>
+            </when>
+        </conditional>
+    </xml>
+    <xml name="mandatory_reference" token_help="" token_argument="">
+        <conditional name="addref_cond">
+            <param name="addref_select" type="select" label="Use a reference sequence">
+                <help>@HELP@</help>
+                <option value="history">Use a genome/index from the history</option>
+                <option value="cached">Use a built-in genome</option>
+            </param>
+            <when value="history">
+                <param name="ref" argument="@ARGUMENT@" type="data" format="fasta,fasta.gz" label="Reference"/>
+            </when>
+            <when value="cached">
+                <param name="ref" argument="@ARGUMENT@" type="select" label="Reference">
+                    <options from_data_table="fasta_indexes">
+                        <filter type="data_meta" ref="input" key="dbkey" column="dbkey"/>
+                        <validator message="No reference genome is available for the build associated with the selected input dataset" type="no_options" />
+                    </options>
+                </param>
+            </when>
+        </conditional>
+    </xml>
+
+
     <token name="@ADDTHREADS@"><![CDATA[
         ##compute the number of ADDITIONAL threads to be used by samtools (-@)
         addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
@@ -70,28 +121,28 @@
     <token name="@ADDMEMORY@"><![CDATA[
         ##compute the number of memory available to samtools sort (-m)
         ##use only 75% of available: https://github.com/samtools/samtools/issues/831
-        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} &&
         ((addmemory=addmemory*75/100)) &&
     ]]></token>
     <xml name="seed_input">
-       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." />
     </xml>
-    <xml name="flag_options">
-        <option value="1">Read is paired</option>
-        <option value="2">Read is mapped in a proper pair</option>
-        <option value="4">Read is unmapped</option>
-        <option value="8">Mate is unmapped</option>
-        <option value="16">Read is mapped to the reverse strand of the reference</option>
-        <option value="32">Mate is mapped to the reverse strand of the reference</option>
-        <option value="64">Read is the first in a pair</option>
-        <option value="128">Read is the second in a pair</option>
-        <option value="256">Alignment of the read is not primary</option>
-        <option value="512">Read fails platform/vendor quality checks</option>
-        <option value="1024">Read is a PCR or optical duplicate</option>
-        <option value="2048">Alignment is supplementary</option>
+    <xml name="flag_options" token_s1="false" token_s2="false" token_s4="false" token_s8="false" token_s16="false" token_s32="false" token_s64="false" token_s128="false" token_s256="false" token_s512="false" token_s1024="false" token_s2048="false">
+        <option value="1" selected="@S1@">Read is paired</option>
+        <option value="2" selected="@S2@">Read is mapped in a proper pair</option>
+        <option value="4" selected="@S4@">Read is unmapped</option>
+        <option value="8" selected="@S8@">Mate is unmapped</option>
+        <option value="16" selected="@S16@">Read is mapped to the reverse strand of the reference</option>
+        <option value="32" selected="@S32@">Mate is mapped to the reverse strand of the reference</option>
+        <option value="64" selected="@S64@">Read is the first in a pair</option>
+        <option value="128" selected="@S128@">Read is the second in a pair</option>
+        <option value="256" selected="@S256@">Alignment of the read is not primary</option>
+        <option value="512" selected="@S512@">Read fails platform/vendor quality checks</option>
+        <option value="1024" selected="@S1024@">Read is a PCR or optical duplicate</option>
+        <option value="2048" selected="@S2048@">Alignment is supplementary</option>
     </xml>
 
-    <!-- region specification macros and tokens for tools that allow the specification 
+    <!-- region specification macros and tokens for tools that allow the specification
          of region by bed file / space separated list of regions -->
     <token name="@REGIONS_FILE@"><![CDATA[
         #if $cond_region.select_region == 'tab':
--- a/samtools_mpileup.xml	Tue Sep 21 09:33:51 2021 +0000
+++ b/samtools_mpileup.xml	Tue Sep 28 16:15:20 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="samtools_mpileup" name="samtools mpileup" version="2.1.4">
+<tool id="samtools_mpileup" name="Samtools mpileup" version="2.1.5" profile="@PROFILE@">
     <description>multi-way pileup of variants</description>
     <macros>
         <import>macros.xml</import>
@@ -7,36 +7,25 @@
     <expand macro="stdio" />
     <expand macro="version_command" />
     <command><![CDATA[
-    
-    #set $input_bams = $reference_source.input_bam
+
+    #set $input_bams = $input
     @PREPARE_IDX_MULTIPLE@
-
-    #if $reference_source.reference_source_selector == "history":
-        #set ref_fa = 'ref.fa'
-        ln -s '${reference_source.ref_file}' 'ref.fa' &&
-        samtools faidx ref.fa &&
-    #else:
-        #set ref_fa = str( $reference_source.ref_file.fields.path )
-    #end if
+    @PREPARE_FASTA_IDX@
 
     samtools mpileup
-        -f '$ref_fa'
+        -f '$reffa'
     #for $i in range(len( $input_bams )):
         '${i}'
     #end for
 
     #if str( $advanced_options.advanced_options_selector ) == "advanced":
         #if str( $advanced_options.filter_by_flags.filter_flags ) == "filter":
-            #if $advanced_options.filter_by_flags.require_flags:
-                #set $filter = $advanced_options.filter_by_flags.require_flags
-                @FLAGS@
-                --rf $flags
-            #end if
-            #if $advanced_options.filter_by_flags.exclude_flags:
-                #set $filter = $advanced_options.filter_by_flags.exclude_flags
-                @FLAGS@
-                --ff $flags
-            #end if
+            #set $filter = $advanced_options.filter_by_flags.require_flags
+            @FLAGS@
+            --rf $flags
+            #set $filter = $advanced_options.filter_by_flags.exclude_flags
+            @FLAGS@
+            --ff $flags
         #end if
         #if str($advanced_options.limit_by_region.limit_by_regions) == "limit":
             #if str( $advanced_options.limit_by_region.region_paste ) != "None":
@@ -46,7 +35,7 @@
                 -l '$advanced_options.limit_by_region.bed_regions'
             #end if
         #end if
-    
+
         #if str( $advanced_options.exclude_read_group.exclude_read_groups ) == "paste":
             -G '$excluded_read_groups'
         #elif str( $advanced_options.exclude_read_group.exclude_read_groups ) == "history"
@@ -67,31 +56,17 @@
         ${output_options_cond.output_mapping_quality}
         ${output_options_cond.output_read_names}
         ${output_options_cond.output_all_pos}
+        #if $output_options_cond.output_tags:
+            --output-extra '$output_options_cond.output_tags'
+        #end if
     #end if
     --output '$output_file_pu'
     ]]></command>
     <inputs>
-        <conditional name="reference_source">
-            <param name="reference_source_selector" type="select" label="Choose the source for the reference genome">
-                <option value="cached">Use a built-in genome</option>
-                <option value="history">Use a genome from the history</option>
-            </param>
-            <when value="cached">
-                <param name="input_bam" type="data" format="bam" multiple="True" min="1" label="BAM file(s)">
-                    <validator type="unspecified_build" />
-                    <validator message="Sequences are not currently available for the specified build." metadata_column="1" metadata_name="dbkey" table_name="fasta_indexes" type="dataset_metadata_in_data_table" />
-                </param>
-                <param name="ref_file" type="select" label="Using reference genome">
-                    <options from_data_table="fasta_indexes" />
-                </param>
-            </when>
-            <when value="history">
-                <param name="input_bam" type="data" format="bam" multiple="True" min="1" label="BAM file(s)">
-                    <validator check="bam_index" message="Metadata missing, click the pencil icon in the history item and use the auto-detect feature to correct this issue." type="metadata" />
-                </param>
-                <param name="ref_file" type="data" format="fasta" label="Using reference genome" />
-            </when>
-        </conditional>
+        <param name="input" type="data" format="bam" multiple="true" min="1" label="BAM file(s)">
+            <validator check="bam_index" message="Metadata missing, click the pencil icon in the history item and use the auto-detect feature to correct this issue." type="metadata" />
+        </param>
+        <expand macro="mandatory_reference" argument="-f"/>
         <conditional name="advanced_options">
             <param name="advanced_options_selector" type="select" label="Set advanced options">
                 <option selected="True" value="default">Basic</option>
@@ -109,7 +84,7 @@
                             <expand  macro="flag_options" />
                         </param>
                         <param name="exclude_flags" argument="--ff/--excl-flags" type="select" multiple="True" display="checkboxes" label="Exclude">
-                            <expand  macro="flag_options" />
+                            <expand  macro="flag_options" s4="true" s256="true" s512="true" s1024="true"/>
                         </param>
                     </when>
                     <when value="nofilter" />
@@ -171,19 +146,20 @@
                     <option value="-a">all (including those with zero depth)</option>
                     <option value="-aa">absolutely all (including unused reference sequences)</option>
                 </param>
+                <param name="output_tags" type="text" argument="--output-extra" label="Add tags to output" help="Output extra read fields and read tag values, e.g., NM and XS (must be comma seperated, e.g., NM,XS)" />
             </when>
         </conditional>
     </inputs>
     <outputs>
-        <data name="output_file_pu" format="pileup" label="${tool.name} on ${on_string} pileup"/>
+        <data name="output_file_pu" format="pileup" label="${tool.name} on ${on_string}"/>
     </outputs>
     <tests>
         <!-- samtools test https://github.com/samtools/samtools/blob/4651d25f2b14cd68ffb0915a74b0c1b529b8cfa1/test/test.pl#L757 -->
         <test>
-            <conditional name="reference_source">
-                <param name="reference_source_selector" value="history" />
-                <param name="ref_file" ftype="fasta" value="mpileup.ref.fa" />
-                <param name="input_bam" ftype="bam" value="mpileup.1.bam,mpileup.2.bam,mpileup.3.bam" />
+            <param name="input" ftype="bam" value="mpileup.1.bam,mpileup.2.bam,mpileup.3.bam" />
+            <conditional name="addref_cond">
+                <param name="addref_select" value="history" />
+                <param name="ref" ftype="fasta" value="mpileup.ref.fa" />
             </conditional>
             <conditional name="advanced_options">
                 <param name="advanced_options_selector" value="advanced" />
@@ -196,10 +172,10 @@
         </test>
 <!-- test_cmd($opts,out=>'dat/mpileup.out.1',err=>'dat/mpileup.err.1',cmd=>"$$opts{bin}/samtools mpileup -b $$opts{tmp}/mpileup.bam.list -f $$opts{tmp}/mpileup.ref.fa.gz -r17:100-150");-->
         <test>
-            <conditional name="reference_source">
-                <param name="reference_source_selector" value="history" />
-                <param name="ref_file" ftype="fasta" value="mpileup.ref.fa" />
-                <param name="input_bam" ftype="bam" value="mpileup.1.bam" />
+            <param name="input" ftype="bam" value="mpileup.1.bam" />
+            <conditional name="addref_cond">
+                <param name="addref_select" value="history" />
+                <param name="ref" ftype="fasta" value="mpileup.ref.fa" />
             </conditional>
             <conditional name="advanced_options">
                 <param name="advanced_options_selector" value="advanced" />
@@ -219,10 +195,10 @@
     -->
         <!-- original test from galaxy tool-->
         <test>
-            <conditional name="reference_source">
-                <param name="reference_source_selector" value="history" />
-                <param name="ref_file" ftype="fasta" value="phiX.fasta" />
-                <param name="input_bam" ftype="bam" value="samtools_mpileup_in_1.bam" />
+            <param name="input" ftype="bam" value="samtools_mpileup_in_1.bam" />
+            <conditional name="addref_cond">
+                <param name="addref_select" value="history" />
+                <param name="ref" ftype="fasta" value="phiX.fasta" />
             </conditional>
             <conditional name="output_options_cond">
                 <param name="output_options_selector" value="advanced" />
@@ -235,9 +211,11 @@
             <output name="output_file_pu" file="samtools_mpileup_out_1.pileup" ftype="pileup" />
         </test>
         <test>
-            <param name="reference_source_selector" value="history" />
-            <param name="ref_file" ftype="fasta" value="phiX.fasta" />
-            <param name="input_bam" ftype="bam" value="phiX.bam" />
+            <param name="input" ftype="bam" value="phiX.bam" />
+            <conditional name="addref_cond">
+                <param name="addref_select" value="history" />
+                <param name="ref" ftype="fasta" value="phiX.fasta" />
+            </conditional>
             <conditional name="output_options_cond">
                 <param name="output_options_selector" value="default" />
             </conditional>
@@ -248,11 +226,13 @@
             <output name="output_file_pu" file="samtools_mpileup_out_2.pileup" ftype="pileup" />
         </test>
         <test>
-            <param name="reference_source_selector" value="history" />
-            <param name="ref_file" ftype="fasta" value="phiX.fasta" />
-            <param name="input_bam" ftype="bam" value="samtools_mpileup_in_1.bam" />
+            <param name="input" ftype="bam" value="samtools_mpileup_in_1.bam" />
+            <conditional name="addref_cond">
+                <param name="addref_select" value="history" />
+                <param name="ref" ftype="fasta" value="phiX.fasta" />
+            </conditional>
             <conditional name="output_options_cond">
-                <param name="output_options_cond" value="advanced" />
+                <param name="output_options_selector" value="advanced" />
                 <param name="base_position_on_reads" value="true" />
                 <param name="output_mapping_quality" value="true" />
             </conditional>
@@ -262,6 +242,18 @@
             </conditional>
             <output name="output_file_pu" file="samtools_mpileup_out_3.pileup" ftype="pileup" />
         </test>
+        <test>
+            <param name="input" ftype="bam" value="mpileup.1.bam" />
+            <conditional name="addref_cond">
+                <param name="addref_select" value="history" />
+                <param name="ref" ftype="fasta" value="mpileup.ref.fa" />
+            </conditional>
+            <conditional name="output_options_cond">
+                <param name="output_options_selector" value="advanced" />
+                <param name="output_tags" value="NM,AM" />
+            </conditional>
+            <output name="output_file_pu" file="mpileup.out.4" ftype="pileup" />
+        </test>
     </tests>
     <help><![CDATA[
 **What it does**
@@ -272,7 +264,7 @@
 
 In the pileup format (without -u or -g), each line represents a genomic position, consisting of chromosome name, 1-based coordinate, reference base, the number of reads covering the site, read bases, base qualities and alignment mapping qualities. Information on match, mismatch, indel, strand, mapping quality and start and end of a read are all encoded at the read base column. At this column, a dot stands for a match to the reference base on the forward strand, a comma for a match on the reverse strand, a '>' or '<' for a reference skip, 'ACGTN' for a mismatch on the forward strand and 'acgtn' for a mismatch on the reverse strand. A pattern '\\+[0-9]+[ACGTNacgtn]+' indicates there is an insertion between this reference position and the next reference position. The length of the insertion is given by the integer in the pattern, followed by the inserted sequence. Similarly, a pattern '-[0-9]+[ACGTNacgtn]+' represents a deletion from the reference. The deleted bases will be presented as '*' in the following lines. Also at the read base column, a symbol '^' marks the start of a read. The ASCII of the character following '^' minus 33 gives the mapping quality. A symbol '$' marks the end of a read segment.
 
-Note that there are two orthogonal ways to specify locations in the input file; via -r region and -l file. The former uses (and requires) an index to do random access while the latter streams through the file contents filtering out the specified regions, requiring no index. The two may be used in conjunction. For example a BED file containing locations of genes in chromosome 20 could be specified using -r 20 -l chr20.bed, meaning that the index is used to find chromosome 20 and then it is filtered for the regions listed in the bed file. 
+Note that there are two orthogonal ways to specify locations in the input file; via -r region and -l file. The former uses (and requires) an index to do random access while the latter streams through the file contents filtering out the specified regions, requiring no index. The two may be used in conjunction. For example a BED file containing locations of genes in chromosome 20 could be specified using -r 20 -l chr20.bed, meaning that the index is used to find chromosome 20 and then it is filtered for the regions listed in the bed file.
 
 **BAQ (Base Alignment Quality)**
 
@@ -280,7 +272,7 @@
 
 BAQ is turned on when a reference file is supplied using the -f option. To disable it, use the -B option.
 
-It is possible to store pre-calculated BAQ values in a SAM BQ:Z tag. Samtools mpileup will use the precalculated values if it finds them. The -E option can be used to make it ignore the contents of the BQ:Z tag and force it to recalculate the BAQ scores by making a new alignment. 
+It is possible to store pre-calculated BAQ values in a SAM BQ:Z tag. Samtools mpileup will use the precalculated values if it finds them. The -E option can be used to make it ignore the contents of the BQ:Z tag and force it to recalculate the BAQ scores by making a new alignment.
     ]]></help>
     <expand macro="citations" />
 </tool>
--- a/test-data/mpileup.out.1	Tue Sep 21 09:33:51 2021 +0000
+++ b/test-data/mpileup.out.1	Tue Sep 28 16:15:20 2021 +0000
@@ -1,36 +1,36 @@
-17	100	C	9	.........	JLJMLLGG4	3	...	DmH	5	.....	HIJ?G
-17	101	C	9	.........	HFLJKMH97	3	...	Aq5	5	.....	FEIEG
-17	102	C	9	.........	FKKLLLKF5	3	...	GpA	5	.....	HHIJG
-17	103	T	8	........	KLLLMLKG	3	...	Fu;	5	.....	MIMHI
-17	104	G	8	........	;HLGKLIH	2	..	Dp	5	.....	ICHCI
-17	105	G	9	........^].	HB6KKKG8;	3	...	Cj0	5	.....	GBCAH
-17	106	G	10	..........	GMKKIKJE2>	2	..	@i	5	.....	GCF5J
-17	107	C	9	.........	IKMKLJKI?	3	...	Gm;	5	.....	JGH?K
-17	108	C	9	.........	HGKLLKLG?	3	...	Fq<	5	.....	IFGBK
-17	109	T	9	.........	ILLOLJJFB	3	...	FvI	5	.....	JJMLL
-17	110	G	9	.........	JJMMKLIHD	3	...	?t?	5	.....	IDFII
-17	111	G	10	..........	G77HJJBA/C	2	..	Cr	4	....	GCHK
-17	112	C	9	.........	IKILKKLI?	3	...	6t;	5	.....	J?IEJ
-17	113	A	9	.........	CGIFIGJE?	2	..	Bs	5	.....	JBJJI
-17	114	C	9	.........	IDGIJJIHB	3	...	Ar;	5	.....	GEDHI
-17	115	C	10	..........	EJJILNGF/A	2	..	Ds	6	.....^].	HFHIH?
-17	116	A	9	.........	DHGJJJIHF	2	..	Ev	7	......,	F8JGIGG
-17	117	G	9	.$........	>BJIMIFJF	2	..	@t	7	......,	H>IFJDD
-17	118	G	9	.........	BFKLJGF/A	1	.	s	7	......,	A>CEECE
-17	119	G	8	........	F?HLKJGG	2	..	s1	7	......,	A1ABLCB
-17	120	A	8	........	FCIIKHGJ	2	..	w=	7	......,	E;I@GIE
-17	121	G	8	........	GFMMMG@H	2	..	u9	7	......,	A<DBJGB
-17	122	C	8	.$.......	DEIKLLJI	3	..^].	u2C	7	.$.....,	E=JGKFH
-17	123	T	7	.......	EMKIEFH	3	...	y>I	6	.....,	EJ;LKK
-17	124	T	9	.$.......^].	?HEIE?/7>	3	...	q6F	6	.....,	?FBCGI
-17	125	A	7	.......	DHICDGA	3	...	s6F	6	.....,	CIBHFD
-17	126	A	8	........	JEKAG0GB	3	...	p6I	6	.....,	GHEMKC
-17	127	C	8	........	JGGJG/DD	3	...	p@E	6	.....,	?GDHGI
-17	128	A	8	........	HJIIE8IE	3	...	rFG	6	.$....,	>GGJHF
-17	129	A	8	........	HFKJD8IC	3	...	oCJ	5	....,	IIMKD
-17	130	A	8	......$..	IJKCE8JD	3	...	kHJ	5	....,	BEMKI
-17	131	C	7	.......	JKKFGGG	3	...	jCF	5	....,	BDKHF
-17	132	A	7	.......	JGKJGKF	3	.$..	nIF	5	....,	HGJGG
+17	100	C	9	.........	JLJMLLGG4	3	..,	DHm	5	.....	HIJ?G
+17	101	C	9	.........	HFLJKMH97	3	..,	A5q	5	.....	FEIEG
+17	102	C	9	.........	FKKLLLKF5	3	..,	GAp	5	.....	HHIJG
+17	103	T	8	........	KLLLMLKG	3	..,	F;u	5	.....	MIMHI
+17	104	G	8	........	;HLGKLIH	2	.,	Dp	5	.....	ICHCI
+17	105	G	9	........^].	HB6KKKG8;	3	..,	C0j	5	.....	GBCAH
+17	106	G	10	..........	GMKKIKJE2>	2	.,	@i	5	.....	GCF5J
+17	107	C	9	.........	IKMKLJKI?	3	..,	G;m	5	.....	JGH?K
+17	108	C	9	.........	HGKLLKLG?	3	..,	F<q	5	.....	IFGBK
+17	109	T	9	.........	ILLOLJJFB	3	..,	FIv	5	.....	JJMLL
+17	110	G	9	.........	JJMMKLIHD	3	..,	??t	5	.....	IDFII
+17	111	G	10	..........	G77HJJBA/C	2	.,	Cr	4	....	GCHK
+17	112	C	9	.........	IKILKKLI?	3	..,	6;t	5	.....	J?IEJ
+17	113	A	9	.........	CGIFIGJE?	2	.,	Bs	5	.....	JBJJI
+17	114	C	9	.........	IDGIJJIHB	3	..,	A;r	5	.....	GEDHI
+17	115	C	10	..........	EJJILNGF/A	2	.,	Ds	6	.....^].	HFHIH?
+17	116	A	9	.........	DHGJJJIHF	2	.,	Ev	7	......,	F8JGIGG
+17	117	G	9	.$........	>BJIMIFJF	2	.,	@t	7	......,	H>IFJDD
+17	118	G	9	.........	BFKLJGF/A	1	,	s	7	......,	A>CEECE
+17	119	G	8	........	F?HLKJGG	2	.,	1s	7	......,	A1ABLCB
+17	120	A	8	........	FCIIKHGJ	2	.,	=w	7	......,	E;I@GIE
+17	121	G	8	........	GFMMMG@H	2	.,	9u	7	......,	A<DBJGB
+17	122	C	8	.$.......	DEIKLLJI	3	.,^].	2uC	7	.$.....,	E=JGKFH
+17	123	T	7	.......	EMKIEFH	3	.,.	>yI	6	.....,	EJ;LKK
+17	124	T	9	.$.......^].	?HEIE?/7>	3	.,.	6qF	6	.....,	?FBCGI
+17	125	A	7	.......	DHICDGA	3	.,.	6sF	6	.....,	CIBHFD
+17	126	A	8	........	JEKAG0GB	3	.,.	6pI	6	.....,	GHEMKC
+17	127	C	8	........	JGGJG/DD	3	.,.	@pE	6	.....,	?GDHGI
+17	128	A	8	........	HJIIE8IE	3	.,.	FrG	6	.$....,	>GGJHF
+17	129	A	8	........	HFKJD8IC	3	.,.	CoJ	5	....,	IIMKD
+17	130	A	8	......$..	IJKCE8JD	3	.,.	HkJ	5	....,	BEMKI
+17	131	C	7	.......	JKKFGGG	3	.,.	CjF	5	....,	BDKHF
+17	132	A	7	.......	JGKJGKF	3	.,.	InF	5	....,	HGJGG
 17	133	T	7	.......	GKHIEGE	3	.,.	ELH	5	....,	EGJIK
 17	134	C	7	.......	KLMKKJH	3	.,.	IKI	5	....,	EGJKD
 17	135	T	7	.......	JLKLHIG	3	.,.	HJK	5	.$...,	DLLJ?
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mpileup.out.4	Tue Sep 28 16:15:20 2021 +0000
@@ -0,0 +1,4101 @@
+17	1	A	0	*	*	*	*
+17	2	A	0	*	*	*	*
+17	3	G	0	*	*	*	*
+17	4	C	0	*	*	*	*
+17	5	T	0	*	*	*	*
+17	6	T	0	*	*	*	*
+17	7	C	0	*	*	*	*
+17	8	T	0	*	*	*	*
+17	9	C	0	*	*	*	*
+17	10	A	0	*	*	*	*
+17	11	C	0	*	*	*	*
+17	12	C	0	*	*	*	*
+17	13	C	0	*	*	*	*
+17	14	T	0	*	*	*	*
+17	15	G	0	*	*	*	*
+17	16	T	0	*	*	*	*
+17	17	T	0	*	*	*	*
+17	18	C	1	^].	@	0	37
+17	19	C	1	.	?	0	37
+17	20	T	1	.	D	0	37
+17	21	G	1	.	E	0	37
+17	22	C	1	.	B	0	37
+17	23	A	2	.^].	GD	0,0	37,37
+17	24	T	2	..	GB	0,0	37,37
+17	25	A	3	..^].	DDD	0,0,0	37,37,25
+17	26	G	3	...	IIF	0,0,0	37,37,25
+17	27	A	3	...	FGE	0,0,0	37,37,25
+17	28	T	3	...	FHE	0,0,0	37,37,25
+17	29	A	3	...	DGG	0,0,0	37,37,25
+17	30	A	3	...	GHG	0,0,0	37,37,25
+17	31	T	3	...	FIH	0,0,0	37,37,25
+17	32	T	3	...	EBG	0,0,0	37,37,25
+17	33	G	3	...	LKJ	0,0,0	37,37,25
+17	34	C	3	...	JJD	0,0,0	37,37,25
+17	35	A	3	...	HII	0,0,0	37,37,25
+17	36	T	3	...	GIH	0,0,0	37,37,25
+17	37	G	3	...	JKK	0,0,0	37,37,25
+17	38	A	3	...	FIJ	0,0,0	37,37,25
+17	39	C	3	...	IJI	0,0,0	37,37,25
+17	40	A	3	...	GJI	0,0,0	37,37,25
+17	41	A	4	...^].	GGHA	0,0,0,0	37,37,25,37
+17	42	T	4	....	HJHB	0,0,0,0	37,37,25,37
+17	43	T	4	....	EGHD	0,0,0,0	37,37,25,37
+17	44	G	4	....	IKLI	0,0,0,0	37,37,25,37
+17	45	C	4	....	IKKI	0,0,0,0	37,37,25,37
+17	46	C	4	....	HIKI	0,0,0,0	37,37,25,37
+17	47	T	4	....	IKLJ	0,0,0,0	37,37,25,37
+17	48	T	4	....	EIHG	0,0,0,0	37,37,25,37
+17	49	G	4	....	>LIK	0,0,0,0	37,37,25,37
+17	50	T	4	....	DIIG	0,0,0,0	37,37,25,37
+17	51	C	4	....	KKLK	0,0,0,0	37,37,25,37
+17	52	C	4	....	HKLJ	0,0,0,0	37,37,25,37
+17	53	C	4	....	GLKK	0,0,0,0	37,37,25,37
+17	54	T	4	....	HJKK	0,0,0,0	37,37,25,37
+17	55	G	4	....	JLMK	0,0,0,0	37,37,25,37
+17	56	C	4	....	FLIK	0,0,0,0	37,37,25,37
+17	57	T	4	....	JKLL	0,0,0,0	37,37,25,37
+17	58	G	4	....	IKLK	0,0,0,0	37,37,25,37
+17	59	A	4	....	FJKJ	0,0,0,0	37,37,25,37
+17	60	A	4	....	IJHJ	0,0,0,0	37,37,25,37
+17	61	T	4	....	DIKI	0,0,0,0	37,37,25,37
+17	62	G	4	....	FLMI	0,0,0,0	37,37,25,37
+17	63	T	4	....	DIII	0,0,0,0	37,37,25,37
+17	64	G	5	....^].	IJMMB	0,0,0,0,0	37,37,25,37,37
+17	65	C	5	.....	JJMKD	0,0,0,0,0	37,37,25,37,37
+17	66	T	5	.....	HLLLG	0,0,0,0,0	37,37,25,37,37
+17	67	C	5	.....	HMJLF	0,0,0,0,0	37,37,25,37,37
+17	68	T	5	.....	JKLLH	0,0,0,0,0	37,37,25,37,37
+17	69	G	6	.....^].	HKLMH?	0,0,0,0,0,0	37,37,25,37,37,37
+17	70	G	6	......	HIKJE>	0,0,0,0,0,0	37,37,25,37,37,37
+17	71	G	6	......	IJLKEB	0,0,0,0,0,0	37,37,25,37,37,37
+17	72	G	6	......	IJILGE	0,0,0,0,0,0	37,37,25,37,37,37
+17	73	T	6	......	CHGGFF	0,0,0,0,0,0	37,37,25,37,37,37
+17	74	C	6	......	KIJMII	0,0,0,0,0,0	37,37,25,37,37,37
+17	75	T	6	......	KKFLIJ	0,0,0,0,0,0	37,37,25,37,37,37
+17	76	C	6	......	KLIKHJ	0,0,0,0,0,0	37,37,25,37,37,37
+17	77	T	6	......	ILKMKK	0,0,0,0,0,0	37,37,25,37,37,37
+17	78	G	6	......	JKMMJK	0,0,0,0,0,0	37,37,25,37,37,37
+17	79	G	6	......	IJJJII	0,0,0,0,0,0	37,37,25,37,37,37
+17	80	G	6	......	HKJLII	0,0,0,0,0,0	37,37,25,37,37,37
+17	81	G	6	......	HHKHJJ	0,0,0,0,0,0	37,37,25,37,37,37
+17	82	T	6	......	?DEGDI	0,0,0,0,0,0	37,37,25,37,37,37
+17	83	C	6	......	JEMMJH	0,0,0,0,0,0	37,37,25,37,37,37
+17	84	T	6	......	JLMLKK	0,0,0,0,0,0	37,37,25,37,37,37
+17	85	C	6	......	KMLLKK	0,0,0,0,0,0	37,37,25,37,37,37
+17	86	A	6	......	EJHJHI	0,0,0,0,0,0	37,37,25,37,37,37
+17	87	C	7	......^].	KHKIIJA	0,0,0,0,0,0,0	37,37,25,37,37,37,37
+17	88	C	7	.......	GFGJKN?	0,0,0,0,0,0,0	37,37,25,37,37,37,37
+17	89	C	7	.......	HKDKKLD	0,0,0,0,0,0,0	37,37,25,37,37,37,37
+17	90	A	7	.......	GIIKIIE	0,0,0,0,0,0,0	37,37,25,37,37,37,37
+17	91	C	7	.......	JKJIJIG	0,0,0,0,0,0,0	37,37,25,37,37,37,37
+17	92	G	7	.......	CD?DEDB	0,0,0,0,0,0,0	37,37,25,37,37,37,37
+17	93	A	7	.......	GKCIIKH	0,0,0,0,0,0,0	37,37,25,37,37,37,37
+17	94	C	7	.......	GDIKIIH	0,0,0,0,0,0,0	37,37,25,37,37,37,37
+17	95	C	8	.......^].	EKLKJHI?	0,0,0,0,0,0,0,0	37,37,25,37,37,37,37,37
+17	96	A	8	........	HIGHIEIE	0,0,0,0,0,0,0,0	37,37,25,37,37,37,37,37
+17	97	A	9	........^>.	FHIIIKIC8	0,0,0,0,0,0,0,0,8	37,37,25,37,37,37,37,37,29
+17	98	C	9	.........	IHIJIJJD2	0,0,0,0,0,0,0,0,8	37,37,25,37,37,37,37,37,29
+17	99	T	9	.........	HIJKKLKF4	0,0,0,0,0,0,0,0,8	37,37,25,37,37,37,37,37,29
+17	100	C	9	.........	JLJMLLGG4	0,0,0,0,0,0,0,0,8	37,37,25,37,37,37,37,37,29
+17	101	C	9	.........	HFLJKMH97	0,0,0,0,0,0,0,0,8	37,37,25,37,37,37,37,37,29
+17	102	C	9	.........	FKKLLLKF5	0,0,0,0,0,0,0,0,8	37,37,25,37,37,37,37,37,29
+17	103	T	8	........	KLLLMLKG	0,0,0,0,0,0,0,0	37,37,25,37,37,37,37,37
+17	104	G	8	........	;HLGKLIH	0,0,0,0,0,0,0,0	37,37,25,37,37,37,37,37
+17	105	G	9	........^].	HB6KKKG8;	0,0,0,0,0,0,0,0,0	37,37,25,37,37,37,37,37,37
+17	106	G	10	..........	GMKKIKJE2>	0,0,0,0,0,0,0,0,8,0	37,37,25,37,37,37,37,37,29,37
+17	107	C	9	.........	IKMKLJKI?	0,0,0,0,0,0,0,0,0	37,37,25,37,37,37,37,37,37
+17	108	C	9	.........	HGKLLKLG?	0,0,0,0,0,0,0,0,0	37,37,25,37,37,37,37,37,37
+17	109	T	9	.........	ILLOLJJFB	0,0,0,0,0,0,0,0,0	37,37,25,37,37,37,37,37,37
+17	110	G	9	.........	JJMMKLIHD	0,0,0,0,0,0,0,0,0	37,37,25,37,37,37,37,37,37
+17	111	G	10	..........	G77HJJBA/C	0,0,0,0,0,0,0,0,8,0	37,37,25,37,37,37,37,37,29,37
+17	112	C	9	.........	IKILKKLI?	0,0,0,0,0,0,0,0,0	37,37,25,37,37,37,37,37,37
+17	113	A	9	.........	CGIFIGJE?	0,0,0,0,0,0,0,0,0	37,37,25,37,37,37,37,37,37
+17	114	C	9	.........	IDGIJJIHB	0,0,0,0,0,0,0,0,0	37,37,25,37,37,37,37,37,37
+17	115	C	10	..........	EJJILNGF/A	0,0,0,0,0,0,0,0,8,0	37,37,25,37,37,37,37,37,29,37
+17	116	A	9	.........	DHGJJJIHF	0,0,0,0,0,0,0,0,0	37,37,25,37,37,37,37,37,37
+17	117	G	9	.$........	>BJIMIFJF	0,0,0,0,0,0,0,0,0	37,37,25,37,37,37,37,37,37
+17	118	G	9	.........	BFKLJGF/A	0,0,0,0,0,0,0,8,0	37,25,37,37,37,37,37,29,37
+17	119	G	8	........	F?HLKJGG	0,0,0,0,0,0,0,0	37,25,37,37,37,37,37,37
+17	120	A	8	........	FCIIKHGJ	0,0,0,0,0,0,0,0	37,25,37,37,37,37,37,37
+17	121	G	8	........	GFMMMG@H	0,0,0,0,0,0,0,0	37,25,37,37,37,37,37,37
+17	122	C	8	.$.......	DEIKLLJI	0,0,0,0,0,0,0,0	37,25,37,37,37,37,37,37
+17	123	T	7	.......	EMKIEFH	0,0,0,0,0,0,0	25,37,37,37,37,37,37
+17	124	T	9	.$.......^].	?HEIE?/7>	0,0,0,0,0,0,8,0,0	25,37,37,37,37,37,29,37,37
+17	125	A	7	.......	DHICDGA	0,0,0,0,0,0,0	37,37,37,37,37,37,37
+17	126	A	8	........	JEKAG0GB	0,0,0,0,0,8,0,0	37,37,37,37,37,29,37,37
+17	127	C	8	........	JGGJG/DD	0,0,0,0,0,8,0,0	37,37,37,37,37,29,37,37
+17	128	A	8	........	HJIIE8IE	0,0,0,0,0,8,0,0	37,37,37,37,37,29,37,37
+17	129	A	8	........	HFKJD8IC	0,0,0,0,0,8,0,0	37,37,37,37,37,29,37,37
+17	130	A	8	......$..	IJKCE8JD	0,0,0,0,0,8,0,0	37,37,37,37,37,29,37,37
+17	131	C	7	.......	JKKFGGG	0,0,0,0,0,0,0	37,37,37,37,37,37,37
+17	132	A	7	.......	JGKJGKF	0,0,0,0,0,0,0	37,37,37,37,37,37,37
+17	133	T	7	.......	GKHIEGE	0,0,0,0,0,0,0	37,37,37,37,37,37,37
+17	134	C	7	.......	KLMKKJH	0,0,0,0,0,0,0	37,37,37,37,37,37,37
+17	135	T	7	.......	JLKLHIG	0,0,0,0,0,0,0	37,37,37,37,37,37,37
+17	136	G	7	.......	IMLGIHH	0,0,0,0,0,0,0	37,37,37,37,37,37,37
+17	137	T	7	.......	EJHHAHF	0,0,0,0,0,0,0	37,37,37,37,37,37,37
+17	138	C	7	.......	GKMIJIH	0,0,0,0,0,0,0	37,37,37,37,37,37,37
+17	139	C	7	.......	FJK@GFF	0,0,0,0,0,0,0	37,37,37,37,37,37,37
+17	140	A	7	.$......	CIIKFHF	0,0,0,0,0,0,0	37,37,37,37,37,37,37
+17	141	G	6	......	MLCJEJ	0,0,0,0,0,0	37,37,37,37,37,37
+17	142	C	6	......	LLFIHF	0,0,0,0,0,0	37,37,37,37,37,37
+17	143	G	6	......	CAE@B@	0,0,0,0,0,0	37,37,37,37,37,37
+17	144	A	6	......	JJJGBG	0,0,0,0,0,0	37,37,37,37,37,37
+17	145	A	6	......	IJCGKG	0,0,0,0,0,0	37,37,37,37,37,37
+17	146	T	6	......	HJJFFG	0,0,0,0,0,0	37,37,37,37,37,37
+17	147	A	6	......	FIJEID	0,0,0,0,0,0	37,37,37,37,37,37
+17	148	C	6	......	KKJGHG	0,0,0,0,0,0	37,37,37,37,37,37
+17	149	C	6	......	JL3IGH	0,0,0,0,0,0	37,37,37,37,37,37
+17	150	T	6	......	KJIEEH	0,0,0,0,0,0	37,37,37,37,37,37
+17	151	G	6	......	ILJHHG	0,0,0,0,0,0	37,37,37,37,37,37
+17	152	C	7	......^].	JLLEIJ=	0,0,0,0,0,0,1	37,37,37,37,37,37,37
+17	153	A	7	.......	EGGFHGA	0,0,0,0,0,0,1	37,37,37,37,37,37,37
+17	154	T	7	.......	DIJHGF@	0,0,0,0,0,0,1	37,37,37,37,37,37,37
+17	155	C	7	.......	KLKJHJD	0,0,0,0,0,0,1	37,37,37,37,37,37,37
+17	156	C	7	.......	ELJHKH7	0,0,0,0,0,0,1	37,37,37,37,37,37,37
+17	157	C	7	.......	GJLGLHE	0,0,0,0,0,0,1	37,37,37,37,37,37,37
+17	158	T	7	.......	IKLEKHF	0,0,0,0,0,0,1	37,37,37,37,37,37,37
+17	159	A	7	.......	EJIDHD@	0,0,0,0,0,0,1	37,37,37,37,37,37,37
+17	160	G	7	.......	HFHHHKI	0,0,0,0,0,0,1	37,37,37,37,37,37,37
+17	161	A	7	.......	DDHHGHD	0,0,0,0,0,0,1	37,37,37,37,37,37,37
+17	162	A	7	.......	?HEH:@G	0,0,0,0,0,0,1	37,37,37,37,37,37,37
+17	163	G	7	.$......	DDGEHI;	0,0,0,0,0,0,1	37,37,37,37,37,37,37
+17	164	T	6	......	EG@E@:	0,0,0,0,0,1	37,37,37,37,37,37
+17	165	G	6	......	GJ>HJG	0,0,0,0,0,1	37,37,37,37,37,37
+17	166	A	6	......	FD@IGH	0,0,0,0,0,1	37,37,37,37,37,37
+17	167	A	6	......	D?EGE9	0,0,0,0,0,1	37,37,37,37,37,37
+17	168	G	6	.$.....	1HKKGE	0,0,0,0,0,1	37,37,37,37,37,37
+17	169	C	5	.....	4>GH1	0,0,0,0,1	37,37,37,37,37
+17	170	C	5	.....	EHLG3	0,0,0,0,1	37,37,37,37,37
+17	171	A	5	.....	HFIGE	0,0,0,0,1	37,37,37,37,37
+17	172	C	5	.....	IHIJD	0,0,0,0,1	37,37,37,37,37
+17	173	C	5	.....	ACDH?	0,0,0,0,1	37,37,37,37,37
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+17	756	G	13	,.,,.,,..,.,.	CEIHAK:HG?HEC	0,0,0,0,0,0,1,2,2,2,2,2,0	37,37,37,37,29,37,37,37,37,37,37,37,37
+17	757	A	14	,.,,.,,..,.,,.	@HEFFG:JHGGG@F	0,0,0,0,0,0,1,2,2,2,2,2,0,0	37,37,37,37,29,37,37,37,37,37,37,37,25,37
+17	758	A	14	,.,,.,,..,.,,.	@GEFDH6KDHG7;@	0,0,0,0,0,0,1,2,2,2,2,2,0,0	37,37,37,37,29,37,37,37,37,37,37,37,25,37
+17	759	A	14	,.,,.,,..,.,,.	CFHD@G?JJGH7?E	0,0,0,0,0,0,1,2,2,2,2,2,0,0	37,37,37,37,29,37,37,37,37,37,37,37,25,37
+17	760	C	14	,$.,,.,,..,.,,.	:GA@;C8GFEHD7G	0,0,0,0,0,0,1,2,2,2,2,2,0,0	37,37,37,37,29,37,37,37,37,37,37,37,25,37
+17	761	G	13	.,,.,,..,.,,.	AJI;JB=CKC?H@	0,0,0,0,0,1,2,2,2,2,2,0,0	37,37,37,29,37,37,37,37,37,37,37,25,37
+17	762	G	13	.,,.,,..,.,,.	FIHDG2FIKGLH<	0,0,0,0,0,1,2,2,2,2,2,0,0	37,37,37,29,37,37,37,37,37,37,37,25,37
+17	763	C	13	.,,.,,..,.,,.	GIHDL<JLLIL2C	0,0,0,0,0,1,2,2,2,2,2,0,0	37,37,37,29,37,37,37,37,37,37,37,25,37
+17	764	A	14	.,,.,,..,.,,.^],	CDAGI?IHHHH8H9	0,0,0,0,0,1,2,2,2,2,2,0,0,2	37,37,37,29,37,37,37,37,37,37,37,25,37,37
+17	765	A	14	.,,.,,..,.,,.,	DHF@H1KIGH8GFB	0,0,0,0,0,1,2,2,2,2,2,0,0,2	37,37,37,29,37,37,37,37,37,37,37,25,37,37
+17	766	C	14	.$,,.,,..,.,,.,	BHI8M7GJJHKFEE	0,0,0,0,0,1,2,2,2,2,2,0,0,2	37,37,37,29,37,37,37,37,37,37,37,25,37,37
+17	767	A	13	,,.,,..,.,,.,	EEAH7JJGIFCG:	0,0,0,0,1,2,2,2,2,2,0,0,2	37,37,29,37,37,37,37,37,37,37,25,37,37
+17	768	C	13	,,.,,..,.,,.,	KE>J;GJIIJGDF	0,0,0,0,1,2,2,2,2,2,0,0,2	37,37,29,37,37,37,37,37,37,37,25,37,37
+17	769	C	13	,,.,,..,.,,.,	HI:K;KKKKGLFI	0,0,0,0,1,2,2,2,2,2,0,0,2	37,37,29,37,37,37,37,37,37,37,25,37,37
+17	770	A	13	,,.,,..,.,,.,	FGCH;JHJGJDF?	0,0,0,0,1,2,2,2,2,2,0,0,2	37,37,29,37,37,37,37,37,37,37,25,37,37
+17	771	T	13	,,.,,..,.,,.,	IFBH=IJIHF>DC	0,0,0,0,1,2,2,2,2,2,0,0,2	37,37,29,37,37,37,37,37,37,37,25,37,37
+17	772	T	13	,,.,,..,.,,.,	GF=I:EEKGHGDA	0,0,0,0,1,2,2,2,2,2,0,0,2	37,37,29,37,37,37,37,37,37,37,25,37,37
+17	773	G	13	,,.,,..,.,,.,	GHDF>KLKLKDIL	0,0,0,0,1,2,2,2,2,2,0,0,2	37,37,29,37,37,37,37,37,37,37,25,37,37
+17	774	A	13	,,.,,..,.,,.,	GHDKCKJIJKDFK	0,0,0,0,1,2,2,2,2,2,0,0,2	37,37,29,37,37,37,37,37,37,37,25,37,37
+17	775	G	13	,,.,,..,.,,.,	FIBJ;LLLLLCJL	0,0,0,0,1,2,2,2,2,2,0,0,2	37,37,29,37,37,37,37,37,37,37,25,37,37
+17	776	A	13	,,.,,..,.,,.,	EDBD=KH;IIC>F	0,0,0,0,1,2,2,2,2,2,0,0,2	37,37,29,37,37,37,37,37,37,37,25,37,37
+17	777	C	13	,,.,,..,.,,.,	DH:J=HKJJIEFD	0,0,0,0,1,2,2,2,2,2,0,0,2	37,37,29,37,37,37,37,37,37,37,25,37,37
+17	778	A	13	,,.,,..,.,,.,	DGCK>JILHLCFL	0,0,0,0,1,2,2,2,2,2,0,0,2	37,37,29,37,37,37,37,37,37,37,25,37,37
+17	779	G	13	,,.,,..,.,,.,	CECK0MJJMIKIC	0,0,0,0,1,2,2,2,2,2,0,0,2	37,37,29,37,37,37,37,37,37,37,25,37,37
+17	780	A	13	,,.,,..,.,,.,	@>DG:HGHIGDF?	0,0,0,0,1,2,2,2,2,2,0,0,2	37,37,29,37,37,37,37,37,37,37,25,37,37
+17	781	A	14	,,.,,..,.,,.,^],	@;@H8LG4IIHGE;	0,0,0,0,1,2,2,2,2,2,0,0,2,2	37,37,29,37,37,37,37,37,37,37,25,37,37,37
+17	782	A	14	,,$.,,..,.,,.,,	?:>G4HK4JJGHH;	0,0,0,0,1,2,2,2,2,2,0,0,2,2	37,37,29,37,37,37,37,37,37,37,25,37,37,37
+17	783	A	13	,$.,,..,.,,.,,	:DG1GKIIIG<7<	0,0,0,1,2,2,2,2,2,0,0,2,2	37,29,37,37,37,37,37,37,37,25,37,37,37
+17	784	C	12	.,,..,.,,.,,	?K>CJLJKBG<E	0,0,1,2,2,2,2,2,0,0,2,2	29,37,37,37,37,37,37,37,25,37,37,37
+17	785	A	12	.,,..,.,,.,,	HK.GJGJCLF?D	0,0,1,2,2,2,2,2,0,0,2,2	29,37,37,37,37,37,37,37,25,37,37,37
+17	786	G	11	.,..,.,,.,,	AHILILGAH;F	0,0,2,2,2,2,2,0,0,2,2	29,37,37,37,37,37,37,25,37,37,37
+17	787	G	12	.,,..,.,,.,,	4I5HI@MFJHDG	0,0,1,2,2,2,2,2,0,0,2,2	29,37,37,37,37,37,37,37,25,37,37,37
+17	788	T	12	.,,..,.,,.,,	2HC?9KIIH=JG	0,0,1,2,2,2,2,2,0,0,2,2	29,37,37,37,37,37,37,37,25,37,37,37
+17	789	G	12	.,,..,.,,.,,	AI0GLHLLEJLI	0,0,1,2,2,2,2,2,0,0,2,2	29,37,37,37,37,37,37,37,25,37,37,37
+17	790	A	12	.,,..,.,,.,,	>I?FHJFLHEJH	0,0,1,2,2,2,2,2,0,0,2,2	29,37,37,37,37,37,37,37,25,37,37,37
+17	791	G	12	.,,..,.,,.,,	?G7FJIMJDJJH	0,0,1,2,2,2,2,2,0,0,2,2	29,37,37,37,37,37,37,37,25,37,37,37
+17	792	T	12	.,,..,.,,.,,	8FD<IJICJ1FG	0,0,1,2,2,2,2,2,0,0,2,2	29,37,37,37,37,37,37,37,25,37,37,37
+17	793	G	12	.,,..,.,,.,,	?GBFLKLKCKJM	0,0,1,2,2,2,2,2,0,0,2,2	29,37,37,37,37,37,37,37,25,37,37,37
+17	794	G	12	.,,..,.,,.,,	/E4FJILJ6GJI	0,0,1,2,2,2,2,2,0,0,2,2	29,37,37,37,37,37,37,37,25,37,37,37
+17	795	T	11	,,..,.,,.,,	D@BHIHG3E?I	0,1,2,2,2,2,2,0,0,2,2	37,37,37,37,37,37,37,25,37,37,37
+17	796	T	13	.,,..,.,,.,,^],	3E@=H8GDAEHHE	0,0,1,2,2,2,2,2,0,0,2,2,4	29,37,37,37,37,37,37,37,25,37,37,37,37
+17	797	G	13	.,,..,.,,.,,,	@F2GLCLEKI=J0	0,0,1,2,2,2,2,2,0,0,2,2,4	29,37,37,37,37,37,37,37,25,37,37,37,37
+17	798	C	12	,,..,.,,.,,,	@@FHKKI.D7J:	0,1,2,2,2,2,2,0,0,2,2,4	37,37,37,37,37,37,37,25,37,37,37,37
+17	799	C	12	,,..,.,,.,,,	FFFKMJMBFMJI	0,1,2,2,2,2,2,0,0,2,2,4	37,37,37,37,37,37,37,25,37,37,37,37
+17	800	T	13	.,$,..,.,,.,,,	=BGILGLFHHIID	0,0,1,2,2,2,2,2,0,0,2,2,4	29,37,37,37,37,37,37,37,25,37,37,37,37
+17	801	G	12	.,..,.,,.,,,	<CFLJKMKCHJ<	0,1,2,2,2,2,2,0,0,2,2,4	29,37,37,37,37,37,37,25,37,37,37,37
+17	802	G	12	.,..,.,,.,,,	9BFGBNL<HLJ=	0,1,2,2,2,2,2,0,0,2,2,4	29,37,37,37,37,37,37,25,37,37,37,37
+17	803	G	12	.,..,.,,.,,,	8BILHKE?EFJA	0,1,2,2,2,2,2,0,0,2,2,4	29,37,37,37,37,37,37,25,37,37,37,37
+17	804	G	11	.$,..,.,,.,,	6CHIGMKLDKH	0,1,2,2,2,2,2,0,0,2,2	29,37,37,37,37,37,37,25,37,37,37
+17	805	C	11	,..,.,,.,,,	5JKAIIJE?I5	1,2,2,2,2,2,0,0,2,2,4	37,37,37,37,37,37,25,37,37,37,37
+17	806	C	11	,..,.,,.,,,	A>JKKLGI:JA	1,2,2,2,2,2,0,0,2,2,4	37,37,37,37,37,37,25,37,37,37,37
+17	807	A	12	,..,.,,.,,,^],	FBGLJKDGGIF<	1,2,2,2,2,2,0,0,2,2,4,2	37,37,37,37,37,37,25,37,37,37,37,37
+17	808	G	12	,..,.,,.,,,,	CHLILIIJGI/A	1,2,2,2,2,2,0,0,2,2,4,2	37,37,37,37,37,37,25,37,37,37,37,37
+17	809	G	12	,..,.,,.,,,,	HDJIKHKFJJFC	1,2,2,2,2,2,0,0,2,2,4,2	37,37,37,37,37,37,25,37,37,37,37,37
+17	810	G	12	,..,.,,.,,c,	GDJJJKAE8J/7	1,2,2,2,2,2,0,0,2,2,4,2	37,37,37,37,37,37,25,37,37,37,37,37
+17	811	A	12	,..,.,,.,,,,	A72?JIHGEGH9	1,2,2,2,2,2,0,0,2,2,4,2	37,37,37,37,37,37,25,37,37,37,37,37
+17	812	A	12	,..,.,,.,,,,	CB<HJH=HH>0>	1,2,2,2,2,2,0,0,2,2,4,2	37,37,37,37,37,37,25,37,37,37,37,37
+17	813	C	12	,..,.,,.,,,,	?AGLJL;EMFBB	1,2,2,2,2,2,0,0,2,2,4,2	37,37,37,37,37,37,25,37,37,37,37,37
+17	814	T	12	,..,.,,.,,,,	BFKCMJIGIHEC	1,2,2,2,2,2,0,0,2,2,4,2	37,37,37,37,37,37,25,37,37,37,37,37
+17	815	T	12	,..,.,,.,,,,	B>AIJIBD6IEC	1,2,2,2,2,2,0,0,2,2,4,2	37,37,37,37,37,37,25,37,37,37,37,37
+17	816	T	12	,$..,.,,.,,,,	<?EIGIIFJI3D	1,2,2,2,2,2,0,0,2,2,4,2	37,37,37,37,37,37,25,37,37,37,37,37
+17	817	C	11	..,.,,.,,,,	BFLJMIJKJLG	2,2,2,2,2,0,0,2,2,4,2	37,37,37,37,37,25,37,37,37,37,37
+17	818	T	11	..,.,,.,,,,	HMGLF?HJHJI	2,2,2,2,2,0,0,2,2,4,2	37,37,37,37,37,25,37,37,37,37,37
+17	819	G	10	..,.,,.,,,	F@DKKGKJKK	2,2,2,2,2,0,0,2,2,2	37,37,37,37,37,25,37,37,37,37
+17	820	G	11	..,.,,.,,,,	HIKLL3B6I:F	2,2,2,2,2,0,0,2,2,4,2	37,37,37,37,37,25,37,37,37,37,37
+17	821	G	11	..,.,,.,,,,	FJKJK7H6H1F	2,2,2,2,2,0,0,2,2,4,2	37,37,37,37,37,25,37,37,37,37,37
+17	822	G	12	..,.,,.,,,,^],	DLHJJ:KGJE??	2,2,2,2,2,0,0,2,2,4,2,2	37,37,37,37,37,25,37,37,37,37,37,37
+17	823	T	12	..,.,,.,,,,,	>DIHI9F5GAHC	2,2,2,2,2,0,0,2,2,4,2,2	37,37,37,37,37,25,37,37,37,37,37,37
+17	824	C	11	..,.,,.,,,,	DJHMJ<HHJGD	2,2,2,2,2,0,0,2,2,2,2	37,37,37,37,37,25,37,37,37,37,37
+17	825	A	12	..,.,,.,,,,,	6HIHIDGIFGE@	2,2,2,2,2,0,0,2,2,4,2,2	37,37,37,37,37,25,37,37,37,37,37,37
+17	826	T	12	..,.,,.,,,,,	6HEJG;D2D4FE	2,2,2,2,2,0,0,2,2,4,2,2	37,37,37,37,37,25,37,37,37,37,37,37
+17	827	A	12	..,.,,.,,,,,	>HHFH>@HD<A?	2,2,2,2,2,0,0,2,2,4,2,2	37,37,37,37,37,25,37,37,37,37,37,37
+17	828	T	12	CCcCc,.ccccc	7=DJKFCKI:GG	2,2,2,2,2,0,0,2,2,4,2,2	37,37,37,37,37,25,37,37,37,37,37,37
+17	829	T	11	..,.,,.,,,,	<=IKIHEFFGA	2,2,2,2,2,0,0,2,4,2,2	37,37,37,37,37,25,37,37,37,37,37
+17	830	C	12	..,.,,.,,,,,	C=KJLGDKMKGJ	2,2,2,2,2,0,0,2,2,4,2,2	37,37,37,37,37,25,37,37,37,37,37,37
+17	831	T	12	..,.,,.,,,,,	F=GGIIJ7GAKI	2,2,2,2,2,0,0,2,2,4,2,2	37,37,37,37,37,25,37,37,37,37,37,37
+17	832	C	12	..,.,,.,,,,,	@=KMKIH<JJLL	2,2,2,2,2,0,0,2,2,4,2,2	37,37,37,37,37,25,37,37,37,37,37,37
+17	833	T	12	..,.,,.,,,,,	3/HKGHI9EBJH	2,2,2,2,2,0,0,2,2,4,2,2	37,37,37,37,37,25,37,37,37,37,37,37
+17	834	G	11	AaAa,.aaaaa	/FFGHIIGCFI	2,2,2,2,0,0,2,2,4,2,2	37,37,37,37,25,37,37,37,37,37,37
+17	835	T	12	.$,.,,.,,,,,^],	/HJH<;DI8JI2	2,2,2,2,0,0,2,2,4,2,2,0	37,37,37,37,25,37,37,37,37,37,37,37
+17	836	G	11	,.,,.,,,,,,	HLG<CIJ@HI@	2,2,2,0,0,2,2,4,2,2,0	37,37,37,25,37,37,37,37,37,37,37
+17	837	T	11	,.,,.,,,,,,	DGG7CCGCLJF	2,2,2,0,0,2,2,4,2,2,0	37,37,37,25,37,37,37,37,37,37,37
+17	838	T	11	,.,,.,,,,,,	FHGF?JHJLHG	2,2,2,0,0,2,2,4,2,2,0	37,37,37,25,37,37,37,37,37,37,37
+17	839	G	11	,.,,.,,,,,,	DJHCGFLHHEI	2,2,2,0,0,2,2,4,2,2,0	37,37,37,25,37,37,37,37,37,37,37
+17	840	A	11	,.,,.,,,,,,	BGGEFIGHEJB	2,2,2,0,0,2,2,4,2,2,0	37,37,37,25,37,37,37,37,37,37,37
+17	841	T	11	,$.,,.,,,,,,	>GE=90H4IJ?	2,2,2,0,0,2,2,4,2,2,0	37,37,37,25,37,37,37,37,37,37,37
+17	842	T	10	.,,.,,,,,,	EEFB=FIGH>	2,2,0,0,2,2,4,2,2,0	37,37,25,37,37,37,37,37,37,37
+17	843	C	10	.,,.,,,,,,	HGEH4KCF:J	2,2,0,0,2,2,4,2,2,0	37,37,25,37,37,37,37,37,37,37
+17	844	T	10	.,,.,,,,,,	HE??FGDDFI	2,2,0,0,2,2,4,2,2,0	37,37,25,37,37,37,37,37,37,37
+17	845	G	10	.,,.,,,,,,	EDBHKG@FKK	2,2,0,0,2,2,4,2,2,0	37,37,25,37,37,37,37,37,37,37
+17	846	G	9	.$,,.,,,,,	ADD;GIHKI	2,2,0,0,2,2,2,2,0	37,37,25,37,37,37,37,37,37
+17	847	T	9	,$,.,,,,,,	BFBIHEHIJ	2,0,0,2,2,4,2,2,0	37,25,37,37,37,37,37,37,37
+17	848	G	8	,$.,,,,,,	>EKGJHAK	0,0,2,2,4,2,2,0	25,37,37,37,37,37,37,37
+17	849	G	6	.$,,,,,	AGI9IC	0,2,2,4,2,2	37,37,37,37,37,37
+17	850	T	6	,,,,,,	HGFIJI	2,2,4,2,2,0	37,37,37,37,37,37
+17	851	G	6	,,,,,,	KH4KG9	2,2,4,2,2,0	37,37,37,37,37,37
+17	852	G	6	,,,,,,	HKCDIB	2,2,4,2,2,0	37,37,37,37,37,37
+17	853	A	6	,,,,,,	DEIGHE	2,2,4,2,2,0	37,37,37,37,37,37
+17	854	A	7	,,,,,,^].	GFHGHC>	2,2,4,2,2,0,0	37,37,37,37,37,37,37
+17	855	A	7	,,,,,,.	HFFEF=>	2,2,4,2,2,0,0	37,37,37,37,37,37,37
+17	856	C	7	,,,,,,.	JHLKK:E	2,2,4,2,2,0,0	37,37,37,37,37,37,37
+17	857	A	7	,,,,,,.	DGHDGHE	2,2,4,2,2,0,0	37,37,37,37,37,37,37
+17	858	A	7	,,,,,,.	JI=KLKC	2,2,4,2,2,0,0	37,37,37,37,37,37,37
+17	859	G	7	,,,,,,.	@LLKLLH	2,2,4,2,2,0,0	37,37,37,37,37,37,37
+17	860	A	7	,,,,,,.	FEEFGHE	2,2,4,2,2,0,0	37,37,37,37,37,37,37
+17	861	C	8	,,,,,,.^],	EJMMMKF0	2,2,4,2,2,0,0,0	37,37,37,37,37,37,37,37
+17	862	T	8	,,,,,,.,	>G;HIII>	2,2,4,2,2,0,0,0	37,37,37,37,37,37,37,37
+17	863	G	9	,$,,,,,.,^].	DIAHKJI?D	2,2,4,2,2,0,0,0,0	37,37,37,37,37,37,37,37,37
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+17	1675	C	11	,.,,.,.,,,,	?F8DH1HA@:?	2,0,0,1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37
+17	1676	G	11	,.,,.,.,,,,	/@GFB:@8H?E	2,0,0,1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37
+17	1677	C	11	,.,,.,.,,,,	B3H.JDK:E>:	2,0,0,1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37
+17	1678	C	11	,.,,.,.,,,,	B/BAH.GIIEI	2,0,0,1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37
+17	1679	A	11	,.,,.,.,,,,	F.H.G8GJIBF	2,0,0,1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37
+17	1680	G	11	,.,,.,.,,,,	=AFEL1JKHDD	2,0,0,1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37
+17	1681	C	11	,$.,,.,.,,,,	?D;AJ1KB@>7	2,0,0,1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37
+17	1682	G	10	.,,.,.,,,,	=D3B5AGEFJ	0,0,1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37
+17	1683	T	10	.,,.,.,,,,	CGFH<GJGHG	0,0,1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37
+17	1684	T	9	,,.,.,,,,	GIG=FEIFI	0,1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37
+17	1685	G	8	,,..,,,,	E2JHJIFK	0,1,0,0,0,0,0,0	37,37,37,37,37,37,37,37
+17	1686	C	9	,,.,.,,,,	IAJEHIDI>	0,1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37
+17	1687	C	8	,,..,,,,	BGEGIIGK	0,1,0,0,0,0,0,0	37,37,37,37,37,37,37,37
+17	1688	C	9	,,.,.,,,,	HMG8GJKGK	0,1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37
+17	1689	T	9	,,.,.,,,,	EID2IFGIJ	0,1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37
+17	1690	C	9	,,.,.,,,,	EMJAGLJFM	0,1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37
+17	1691	T	9	,,.,.,,,,	CIJ6FHHHH	0,1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37
+17	1692	G	8	,,..,,,,	B?KIJIBJ	0,1,0,0,0,0,0,0	37,37,37,37,37,37,37,37
+17	1693	T	9	,,.,.,,,,	CEFIEICII	0,1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37
+17	1694	T	9	,,.,.,,,,	D3CJEGHIG	0,1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37
+17	1695	C	9	,$,.,.,,,,	:;JEIKJJD	0,1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37
+17	1696	T	8	,.,.,,,,	FI5JEJMH	1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37
+17	1697	G	8	,.,.,,,,	4K3HKJFH	1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37
+17	1698	C	8	,.,.,,,,	JI:IMLGK	1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37
+17	1699	T	7	,..,,,,	BIFHGIG	1,0,0,0,0,0,0	37,37,37,37,37,37,37
+17	1700	G	7	,..,,,,	JLLIJBJ	1,0,0,0,0,0,0	37,37,37,37,37,37,37
+17	1701	T	8	,.,.,,,,	@ECGEGHE	1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37
+17	1702	T	8	,.,.,,,,	JB:GEGHK	1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37
+17	1703	T	7	,..,,,,	GGEEHED	1,0,0,0,0,0,0	37,37,37,37,37,37,37
+17	1704	T	8	,.,.,,,,	EFHF<EEJ	1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37
+17	1705	C	8	,.,.,,,,	BJIIKLGM	1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37
+17	1706	T	8	,.,.,,,,	CIIJGGFJ	1,0,1,0,0,0,0,0	37,37,37,37,37,37,37,37
+17	1707	C	9	,.,.,,,,^],	KJ:GKKGM:	1,0,1,0,0,0,0,0,1	37,37,37,37,37,37,37,37,37
+17	1708	T	10	,.,.,,,,,^],	8JHJJFCJD/	1,0,1,0,0,0,0,0,1,1	37,37,37,37,37,37,37,37,37,37
+17	1709	A	9	,..,,,,,,	EFEGABHC;	1,0,0,0,0,0,0,1,1	37,37,37,37,37,37,37,37,37
+17	1710	C	11	,.,.,,,,,,^],	IHDG:HHKE0B	1,0,1,0,0,0,0,0,1,1,1	37,37,37,37,37,37,37,37,37,37,37
+17	1711	C	11	,.,.,,,,,,,	KH;HKKDLAFE	1,0,1,0,0,0,0,0,1,1,1	37,37,37,37,37,37,37,37,37,37,37
+17	1712	A	11	,.,.,,,,,,,	FH:GLILL@EH	1,0,1,0,0,0,0,0,1,1,1	37,37,37,37,37,37,37,37,37,37,37
+17	1713	G	12	,.,.,,,,,,,^],	HKDKKKJKHDD?	1,0,1,0,0,0,0,0,1,1,1,0	37,37,37,37,37,37,37,37,37,37,37,37
+17	1714	A	12	,.,.,,,,,,,,	GH3IIGHI9:9B	1,0,1,0,0,0,0,0,1,1,1,0	37,37,37,37,37,37,37,37,37,37,37,37
+17	1715	A	12	,.,.,,,,,,,,	JHFEKHLLKGDF	1,0,1,0,0,0,0,0,1,1,1,0	37,37,37,37,37,37,37,37,37,37,37,37
+17	1716	G	12	,.,.,,,,,,,,	@KKLDKEIHGDA	1,0,1,0,0,0,0,0,1,1,1,0	37,37,37,37,37,37,37,37,37,37,37,37
+17	1717	T	13	,.,.,,,,,,,,^],	FECFKGGJC@HEB	1,0,1,0,0,0,0,0,1,1,1,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1718	G	12	,..,,,,,,,,,	DILIEFLJ4I@4	1,0,0,0,0,0,0,1,1,1,0,0	37,37,37,37,37,37,37,37,37,37,37,37
+17	1719	C	15	,.,.,,,,,,,,,^].^].	EK8FEECK5FJFE?@	1,0,1,0,0,0,0,0,1,1,1,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1720	C	15	,.,.,,,,,,,,,..	HJIEJJJLJGFFF=B	1,0,1,0,0,0,0,0,1,1,1,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1721	C	14	,.,.,,,,,,,,..	=I;CLMFL?:@F?C	1,0,1,0,0,0,0,0,1,1,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1722	T	14	,.,.,,,,,,,,..	FJ3HIJCFIGFEFE	1,0,1,0,0,0,0,0,1,1,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1723	T	15	,.,.,,,,,,,,,..	EG6EFF?DJ96A5DC	1,0,1,0,0,0,0,0,1,1,1,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1724	C	15	,.,.,,,,,,,,,..	<J8IKJGJ2CJBFIH	1,0,1,0,0,0,0,0,1,1,1,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1725	C	15	,.,.,,,,g,,,,..	AG?H9HGI:FJDA@E	1,0,1,0,0,0,0,0,1,1,1,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1726	C	15	,.,.,,,,,,,,,..	IH<IMKELKIMHI@G	1,0,1,0,0,0,0,0,1,1,1,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1727	T	15	,.,.,,,,,,,,,..	EI0HHGDF?GJA7HH	1,0,1,0,0,0,0,0,1,1,1,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1728	C	15	,.,.,,,,,,,,,..	BJGHCIFEIAJB?HH	1,0,1,0,0,0,0,0,1,1,1,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1729	C	15	,.,.,,,,,,,,,..	GFMJHKGMIIKKKGG	1,0,1,0,0,0,0,0,1,1,1,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1730	T	15	,.,.,,,,,,,,,..	9GHGCGD?=EEG5FH	1,0,1,0,0,0,0,0,1,1,1,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1731	C	15	,$.,.,,,,,,,,,..	BIHILIFLLHAKJJI	1,0,1,0,0,0,0,0,1,1,1,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1732	A	15	.,.,,,,,,,,,..^].	FHIDD@<0:FCAEGD	0,1,0,0,0,0,0,1,1,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1733	C	16	.,.,,,,,,,,,...^].	E?HHGEH/GLHHHHBB	0,1,0,0,0,0,0,1,1,1,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1734	C	16	.,.,,,,,,,,,....	E:HMLLJMLMIHGG=B	0,1,0,0,0,0,0,1,1,1,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1735	T	17	.,.,,,,,,,,,....^].	F.JJHFH@IFHFIIHHB	0,1,0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1736	G	16	..,,,,,,,,,.....	EGIJEJ?ILFJIGGHF	0,0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1737	A	17	.$,.,,,,,,,,,.....	/GFIFCGDBBDDGFHGF	0,1,0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1738	C	16	,.,,,,,,,,,.....	CGLGFL;=KIBGGGHD	1,0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1739	C	16	,.,,,,,,,,,.....	JIMJEL:FHDKGGFJE	1,0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1740	A	16	,.,,,,,,,,,.....	3GDFBGIFC<ADFIH4	1,0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1741	C	16	,.,,,,,,,,,.....	<HKKFJ9KMKJHGHIE	1,0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1742	T	16	,.,,,,,,,,,.....	8HJGFJIGFHGEHHKH	1,0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1743	C	16	,.,,,,,,,,,.....	<JLKHLNIJKIHIIKI	1,0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1744	T	15	.,,,,,,,,,.....	GIGDJEHEGEFHKKH	0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1745	G	16	,.,,,,,,,,,.....	5IJHJKGBLIIJJLKH	1,0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1746	G	15	.,,,,,,,,,.....	H?HJKBDEGIDFKIH	0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1747	G	15	.,,,,,,,,,.....	DKHJL@7EFHHGKKG	0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1748	G	16	,.,,,,,,,,,.....	/GHIILAGIIHBHKIJ	1,0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1749	A	15	.,,,,,,,,,.....	GGGGI3CFAGEHIIH	0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1750	A	16	,.,,,,,,,,,.....	BFHEGH<?HE?HHIKH	1,0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1751	A	16	,$.,,,,,,,,,.....	@DHHFIB<AHAIHJNF	1,0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1752	T	15	.,,,,,,,,,.....	EIHIGH8:GDEGFJH	0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1753	C	15	.,,,,,,,,,.....	E@HHJKAKHIEIKLJ	0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1754	C	15	.,,,,,,,,,.....	BAGHJEFKIGHHJKH	0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1755	C	15	.$,,,,,,,,,.....	6IJGMBLMKCHHKKJ	0,0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1756	T	14	,,,,,,,,,.....	IHIJEFFGFJIHJK	0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1757	C	14	,,,,,,,,,.....	KIFKFELGIHJLMK	0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1758	A	14	,,,,,,,,,.....	LHFLEFKJHFGKHH	0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1759	G	14	,,,,,,,,,.....	IFDLLHFIJBIGJK	0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1760	C	14	,,,,,,,,,.....	KIAKMHFGKIIKKK	0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1761	A	14	,,,$,,,,,,.....	HE@G31B>1HFIHH	0,0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1762	C	13	,,,,,,,,.....	GHJ:>JHBHIJJG	0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1763	C	13	,,,,,,,,.....	HEI@@KHJJGLLK	0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1764	C	13	,,,,,,,,.....	JHLDKLKLFFKNK	0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1765	T	13	,,,,,,,,.....	GFHCGCDEHIKLK	0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1766	C	13	,,,,,,,,.....	=FHLILIGJELLK	0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1767	C	13	,,,,,,,,.....	BBHJ4JHJDIMLL	0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1768	C	13	,,,,,,,,.....	FFJKDLKKFFJLK	0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1769	T	13	,$,$,,,,,,.....	D@GHCIGGHIMKK	0,0,0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1770	G	11	,,,,,,.....	GJ=KH=JLKMK	0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37
+17	1771	A	11	,,,,,,.....	FIELGHFIIJI	0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37
+17	1772	G	11	,$,,,,,.....	DEHKJ@GJHLL	0,1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37
+17	1773	C	10	,,,,,.....	IIKJKGHKLK	1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37
+17	1774	A	10	,,,,,.....	DGHFFHHJJI	1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37
+17	1775	T	10	,,,,,.....	E<HEDCIHKI	1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37
+17	1776	A	10	,,,,,.....	?DGCB@GHIH	1,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37
+17	1777	C	11	,,,,,.....^].	K6JIFIIJLJA	1,1,1,0,0,0,0,0,0,0,2	37,37,37,37,37,37,37,37,37,37,37
+17	1778	C	11	,,,,,......	EDJHIDHKKMA	1,1,1,0,0,0,0,0,0,0,2	37,37,37,37,37,37,37,37,37,37,37
+17	1779	C	11	,,,,,......	HJLKIHELLJD	1,1,1,0,0,0,0,0,0,0,2	37,37,37,37,37,37,37,37,37,37,37
+17	1780	T	11	,,,,,......	I.FFEIIKLKG	1,1,1,0,0,0,0,0,0,0,2	37,37,37,37,37,37,37,37,37,37,37
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+17	1821	C	12	....,,.,,,..	KKKCG<GF/HA;	0,0,0,2,1,1,0,1,0,0,1,1	37,37,37,37,37,37,37,37,37,37,37,37
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+17	1826	T	13	....,,.,,,...	HGBD/B=FJC7BC	0,0,0,2,1,1,0,1,0,0,1,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37
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+17	1829	C	12	....,,.,,,..	EFIB86EBD<FH	0,0,0,2,1,1,0,1,0,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37
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+17	1831	T	11	.$...,.,,,..	5DFBAIHIEAE	0,0,0,2,1,0,1,0,0,1,0	37,37,37,37,37,37,37,37,37,37,37
+17	1832	C	11	.$..,,.,,,..	BEJGIKKNLII	0,0,2,1,1,0,1,0,0,1,0	37,37,37,37,37,37,37,37,37,37,37
+17	1833	T	10	..,,.,,,..	DG:.KDKFIC	0,2,1,1,0,1,0,0,1,0	37,37,37,37,37,37,37,37,37,37
+17	1834	C	11	.$.,,.,,,..^2.	AMGKJMDNAJ<	0,2,1,1,0,1,0,0,1,0,5	37,37,37,37,37,37,37,37,37,37,17
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+17	1841	C	11	.,,.,,,....	L3GKGBJ:5HC	2,1,1,0,1,0,0,1,1,0,5	37,37,37,37,37,37,37,37,37,37,17
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+17	1850	C	14	.,,.,,,.....,,	HIFLI<LC<IFE>F	2,1,1,0,1,0,0,1,1,0,5,1,0,0	37,37,37,37,37,37,37,37,37,37,17,37,37,37
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+17	1864	T	17	.,,.,,,....,..,,.	KFFBIHIEE3H:HG3GF	2,1,1,0,1,0,0,1,0,5,1,0,0,1,2,0,0	37,37,37,37,37,37,37,37,37,17,37,37,37,37,37,37,37
+17	1865	G	18	.,,.,,,....,,..,,.	CEFLHKLDC?I7DIB<EH	2,1,1,0,1,0,0,1,0,5,1,0,0,0,1,2,0,0	37,37,37,37,37,37,37,37,37,17,37,37,37,37,37,37,37,37
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+17	1867	C	16	.,,.,,,..,,..,,.	?D<FH8H:I=HJFCGF	2,1,1,0,1,0,0,0,1,0,0,0,1,2,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1868	C	18	.,,.,,,....,,..,,.	EJIKJDKIIGH>EHGBJF	2,1,1,0,1,0,0,1,0,5,1,0,0,0,1,2,0,0	37,37,37,37,37,37,37,37,37,17,37,37,37,37,37,37,37,37
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+17	1952	A	13	.,,......,...	>FCBGDKGHDEI@	1,2,0,0,0,0,0,0,0,0,0,0,1	37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1953	A	14	.,,......,...^].	1EDDFBJHH@FH?>	1,2,0,0,0,0,0,0,0,0,0,0,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1954	A	15	,,.....,.,....^],	FEGGHIG2AEHEA>3	2,0,0,0,0,0,0,3,0,0,0,0,1,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1955	C	14	,,......,....,	C>EIEKIIHFIEE6	2,0,0,0,0,0,0,0,0,0,0,1,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1956	C	15	,,.....,.,....,	C;GIIII49=JLGDD	2,0,0,0,0,0,0,3,0,0,0,0,1,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1957	C	15	,,$.....,.,....,	F:HIILI?DJFK?FE	2,0,0,0,0,0,0,3,0,0,0,0,1,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1958	C	15	,.....,.,....,^].	@CIHLI1AKFL@GA?	2,0,0,0,0,0,3,0,0,0,0,1,1,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1959	T	16	.,.....,.,....,.	9EEIJLHDHHIJHHGD	1,2,0,0,0,0,0,3,0,0,0,0,1,1,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1960	T	17	.,.....,.,....,.^].	.CCFEGEGGFBH>ECA?	1,2,0,0,0,0,0,3,0,0,0,0,1,1,1,0,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1961	C	17	.$,$.....,.,....,..	1AGJJKI4HKJLGIKED	1,2,0,0,0,0,0,3,0,0,0,0,1,1,1,0,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1962	T	16	.$....,.,....,..^].	EKHLJGIIEKEHDFG?	0,0,0,0,0,3,0,0,0,0,1,1,1,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1963	G	15	....,.,....,...	HIMJCKHEKGJKGFE	0,0,0,0,3,0,0,0,0,1,1,1,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1964	G	15	....,.,....,...	JILJ<HA=LEHI9B@	0,0,0,0,3,0,0,0,0,1,1,1,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1965	T	15	.....,....,...^],	GEICGEDGDEICC5.	0,0,0,0,0,0,0,0,1,1,1,0,1,0,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1966	T	16	....,.,....,...,	GFIFEDFAH?FIC?A>	0,0,0,0,3,0,0,0,0,1,1,1,0,1,0,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1967	A	16	....,.,....,...,	EGI??AEDHAFICDC@	0,0,0,0,3,0,0,0,0,1,1,1,0,1,0,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1968	T	16	....,.,....,...,	EFIGDH@HICGHF?C@	0,0,0,0,3,0,0,0,0,1,1,1,0,1,0,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1969	A	16	....,.,....,...,	DDGE49EEJDEHCD>D	0,0,0,0,3,0,0,0,0,1,1,1,0,1,0,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1970	C	16	....,.,....,...,	HFIA4CIIIBIJGFFJ	0,0,0,0,3,0,0,0,0,1,1,1,0,1,0,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1971	A	16	....,.,....,...,	GCGG2HEFJGGFFGFH	0,0,0,0,3,0,0,0,0,1,1,1,0,1,0,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1972	T	17	....,.,....,...,^],	DHIFEH<CD5GJFGFG6	0,0,0,0,3,0,0,0,0,1,1,1,0,1,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1973	A	17	....,.,....,...,,	BCIDEAGFE>EGEDDBB	0,0,0,0,3,0,0,0,0,1,1,1,0,1,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1974	A	17	....,.,....,...,,	GEGH3I?GIGHLFFFME	0,0,0,0,3,0,0,0,0,1,1,1,0,1,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1975	G	17	....,.,....,...,,	IGKKJLIBMGLLH>AKF	0,0,0,0,3,0,0,0,0,1,1,1,0,1,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1976	A	17	....,.,....,...,,	DECGBADCI=H7EFFCB	0,0,0,0,3,0,0,0,0,1,1,1,0,1,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1977	C	17	....,.,....,...,,	FFGD6JFIK.IKGIAHH	0,0,0,0,3,0,0,0,0,1,1,1,0,1,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1978	A	17	....,.,....,...,,	DDFEH?G@JEHKIFGIF	0,0,0,0,3,0,0,0,0,1,1,1,0,1,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1979	G	16	.....,....,...,,	GFGHJHBM@LHIG<KH	0,0,0,0,0,0,0,0,1,1,1,0,1,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1980	C	16	.$.$...,....,...,,	>>EELEKKJI?HIC.C	0,0,0,0,0,0,0,0,1,1,1,0,1,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1981	C	17	.$.,.,....,...,,^].^],	<DCADHD8IKEHDLGAE	0,0,3,0,0,0,0,1,1,1,0,1,0,1,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1982	A	16	.$,.,....,...,,.,	?HFFGKCH;EFEJCEC	0,3,0,0,0,0,1,1,1,0,1,0,1,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1983	G	16	,.,....,...,,.,.	BJHFNHJLHKHKIG?5	3,0,0,0,0,1,1,1,0,1,0,1,0,0,0,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1984	A	16	,.,....,...,,.,.	CEIGGEFLB@GHHEHD	3,0,0,0,0,1,1,1,0,1,0,1,0,0,0,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1985	G	16	,.,....,...,,.,.	BJIJMFJHJKFHKHEG	3,0,0,0,0,1,1,1,0,1,0,1,0,0,0,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1986	A	16	,.,....,...,,.,.	;GCF@CG?CLGAEEBE	3,0,0,0,0,1,1,1,0,1,0,1,0,0,0,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1987	A	17	,.,....,...,,.,.^].	7HGGI?GIEGCLIEI>D	3,0,0,0,0,1,1,1,0,1,0,1,0,0,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1988	G	17	,.,....,...,,.,..	GIGJIKJIHFIIAIEGD	3,0,0,0,0,1,1,1,0,1,0,1,0,0,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1989	G	16	.,....,...,,.,..	HG=K<HMGGILJGDF:	0,0,0,0,1,1,1,0,1,0,1,0,0,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1990	G	16	.,....,...,,.,..	AHFIFIKGGILJIED=	0,0,0,0,1,1,1,0,1,0,1,0,0,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1991	A	17	,.,....,...,,.,..	7FHGK:ELFE=FJGLFG	3,0,0,0,0,1,1,1,0,1,0,1,0,0,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1992	G	17	,.,....,...,,.,..	FGHIM=KHHJ@JJJDFK	3,0,0,0,0,1,1,1,0,1,0,1,0,0,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1993	T	17	,.,....,...,,.,..	@FGDI>DIBDEDGGIFG	3,0,0,0,0,1,1,1,0,1,0,1,0,0,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1994	T	17	,.,....,...,,.,..	C9FAIFGGED8IGFIEF	3,0,0,0,0,1,1,1,0,1,0,1,0,0,0,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1995	G	18	,.,....,...,,.,..^],	1HFFLIJHD<@LIJJCJ@	3,0,0,0,0,1,1,1,0,1,0,1,0,0,0,1,0,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1996	C	19	,.,....,...,,.,..,^].	2<HJHKIKIICHEJIIJDA	3,0,0,0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1997	C	18	.,....,...,,.,..,.	GFB<7I0GH4BIIJIJCB	0,0,0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1998	C	19	,$.,....,...,,.,..,.	/7HHLHH:7GEBIKJHHGD	3,0,0,0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	1999	A	19	.,....,...,,.,..,.^].	DDDJGILDGGIFIKGHFF?	0,0,0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2000	G	19	.,....,...,,.,..,..	GFCI2LKJKFLGKKKJEJD	0,0,0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2001	G	18	.,...,...,,.,..,..	?FGJEJEF:GHJEHKHH@	0,0,0,0,1,1,0,1,0,1,0,0,0,1,0,1,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2002	G	19	.,....,...,,.,..,..	CF>HEJ?F/2FEEIIKGH@	0,0,0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2003	T	19	.$,....,...,,.,..,..	4FEI>FK3EB>ECG4H?GE	0,0,0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2004	G	18	,....,...,,.,..,..	?GMDKAHFHJDLKHIEJH	0,0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2005	G	18	,....,...,,.,..,..	F9J0I7H:?KICJCHHI@	0,0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2006	C	18	,....,...,,.,..,..	EGDIJKIA7LCFLHKJKF	0,0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2007	A	18	,$....,...,,.,..,..	BGJIHBFEBIEFHDICHG	0,0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2008	C	17	....,...,,.,..,..	7KJJJIJCGJJMH>JIF	0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2009	A	17	....,...,,.,..,..	GJ=GIHGGDKFLDHJJF	0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2010	G	17	....,...,,.,..,..	HJ>MIH:;JILLKLIMB	0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2011	C	17	....,...,,.,..,..	JJ9JKIFFFKLLJLJKH	0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2012	A	18	....,...,,.,..,..^],	CIDI>HE>DFHHEGBJG3	0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2013	C	17	...,...,,.,..,..,	EJIEFI<C?JCHI?JG4	0,0,1,1,0,1,0,1,0,0,0,1,0,1,1,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2014	G	18	....,...,,.,..,..,	;D6BFAA>KIDJADHD@F	0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2015	T	18	....,...,,.,..,..,	CIFFIFB<IJIJFHGIE=	0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2016	T	18	....,...,,.,..,..,	BCEGIF57GHIJFHHECD	0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1,0	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2017	G	19	....,...,,.,..,..,^],	GL>JFI;IGKLDHKGKA2<	0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1,0,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2018	C	19	....,...,,.,..,..,,	FHAJMII8KFKMILJKJJB	0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1,0,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2019	T	19	....,...,,.,..,..,,	GLCFHJI>EHIJALHLFFD	0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1,0,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37
+17	2020	G	20	.$...,...,,.,..,..,,^>.	CJHJHGKHLILKIJILIAC@	0,0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1,0,1,3	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,29
+17	2021	C	21	...,...,,.,..,..,,.^].^],	LIKBJJG;IMGGJILJJ.BA:	0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1,0,1,3,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,29,37,37
+17	2022	C	21	...,...,,.,..,..,,..,	GEGEI@?LLLLHMHKHFBEAB	0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1,0,1,3,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,29,37,37
+17	2023	A	20	...,...,,.,..,..,..,	I0GGFEAEGFKGFIJ@KFEF	0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1,1,3,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,29,37,37
+17	2024	G	21	...,...,,.,..,..,,..,	K<KB;KKKHMJHLJMG>CFHF	0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1,0,1,3,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,29,37,37
+17	2025	T	21	...,...,,.,..,..,,..,	F6FIE;EIGHJFIGHDBHFDB	0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1,0,1,3,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,29,37,37
+17	2026	T	21	...,...,,.,..,..,,..,	E4EFDEFJBFICIEIEBEFDF	0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1,0,1,3,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,29,37,37
+17	2027	A	21	...,...,,.,..,..,,..,	@9FGEEEIGHIEGEJEHEFDB	0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1,0,1,3,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,29,37,37
+17	2028	C	21	...,...,,.,..,..,,..,	FFILGKFKDKKHJKJGKKEGK	0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1,0,1,3,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,29,37,37
+17	2029	T	21	...,...,,.,..,..,,..,	C<JIHHFJEKJGDGLEGFJHI	0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1,0,1,3,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,29,37,37
+17	2030	G	21	.$..,...,,.,..,..,,..,	DGKIBIILKLKHJHKEKFGIJ	0,1,1,1,0,1,0,1,0,0,0,1,0,1,1,1,0,1,3,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,29,37,37
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+17	2032	C	20	..,...,,.,..,..,,..,	GHKHHCMIKDBKIMGECJHL	1,1,1,0,1,0,1,0,0,0,1,0,1,1,1,0,1,3,1,1	37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,37,29,37,37
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+17	2493	A	13	,..G.,,.,,.,,	FFA.GLIBKJELJ	0,0,0,16,0,2,0,0,0,0,0,0,0	37,37,37,29,37,37,37,37,37,37,37,37,37
+17	2494	G	12	,...,,.,,.,,	DL=LGFHID9KH	0,0,0,0,2,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37,37
+17	2495	T	11	,...,,.,,,,	>F=FIIFIII?	0,0,16,0,2,0,0,0,0,0,0	37,37,29,37,37,37,37,37,37,37,37
+17	2496	T	13	,$....,,.,,.,,	;EC1JJHEFEHGD	0,0,0,16,0,2,0,0,0,0,0,0,0	37,37,37,29,37,37,37,37,37,37,37,37,37
+17	2497	T	12	....,,.,,.,,	E18IIHFILEJG	0,0,16,0,2,0,0,0,0,0,0,0	37,37,29,37,37,37,37,37,37,37,37,37
+17	2498	G	12	....,,.,,.,,	IH8IFK?IKDMD	0,0,16,0,2,0,0,0,0,0,0,0	37,37,29,37,37,37,37,37,37,37,37,37
+17	2499	A	12	....,,.,,.,,	AC@JJI:JLKKF	0,0,16,0,2,0,0,0,0,0,0,0	37,37,29,37,37,37,37,37,37,37,37,37
+17	2500	G	11	...,,.,,.,,	H4MJGJIL9JI	0,0,0,2,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37
+17	2501	G	11	...,,.,,.,,	GGJHKEJKHLJ	0,0,0,2,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,37,37
+17	2502	C	12	....,,.,,.,,	FB?HLJCJJFMJ	0,0,16,0,2,0,0,0,0,0,0,0	37,37,29,37,37,37,37,37,37,37,37,37
+17	2503	T	12	....,,.,,.,,	@G>LIGGILKEH	0,0,16,0,2,0,0,0,0,0,0,0	37,37,29,37,37,37,37,37,37,37,37,37
+17	2504	G	12	.$...,,.,,.,,	>?.KJDBJJJLI	0,0,16,0,2,0,0,0,0,0,0,0	37,37,29,37,37,37,37,37,37,37,37,37
+17	2505	C	11	...,,.,,.,,	9JKKJHKFFIK	0,16,0,2,0,0,0,0,0,0,0	37,29,37,37,37,37,37,37,37,37,37
+17	2506	T	11	.$..,,.,,.,,	.BJFGEHLEIE	0,16,0,2,0,0,0,0,0,0,0	37,29,37,37,37,37,37,37,37,37,37
+17	2507	G	9	.,,.,,.,,	IIG1IHLJI	0,2,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37
+17	2508	T	9	.,,.,,.,,	GIF;FKHIG	0,2,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37
+17	2509	G	9	.,,.,,.,,	JFJ9KKJMI	0,2,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37
+17	2510	A	10	..,,.,,.,,	FEKIEGL2IH	16,0,2,0,0,0,0,0,0,0	29,37,37,37,37,37,37,37,37,37
+17	2511	G	10	..,,.,,.,,	BIJHIKJBKD	16,0,2,0,0,0,0,0,0,0	29,37,37,37,37,37,37,37,37,37
+17	2512	C	10	..,,.,,.,,	0GHJKKIJMK	16,0,2,0,0,0,0,0,0,0	29,37,37,37,37,37,37,37,37,37
+17	2513	T	10	.$.,,.,,.,,	4FHG.HKLIE	16,0,2,0,0,0,0,0,0,0	29,37,37,37,37,37,37,37,37,37
+17	2514	G	9	.$,,.,,.,,	BFIFIG.HG	0,2,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37
+17	2515	T	8	,,.,,.,,	EF1GK0IC	2,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37
+17	2516	G	8	,,.,,.,,	FJ:JK@JC	2,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37
+17	2517	A	8	,,.,,.,,	AGGGHFJD	2,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37
+17	2518	T	7	,$,,,.,,	EFHKHHE	2,0,0,0,0,0,0	37,37,37,37,37,37,37
+17	2519	C	7	,.,,.,,	@DB@CE?	0,0,0,0,0,0,0	37,37,37,37,37,37,37
+17	2520	G	7	,.,,.,,	HAIG1KE	0,0,0,0,0,0,0	37,37,37,37,37,37,37
+17	2521	C	7	,.,,.,,	IHIIKKG	0,0,0,0,0,0,0	37,37,37,37,37,37,37
+17	2522	A	7	,.,,.,,	F9FG3GE	0,0,0,0,0,0,0	37,37,37,37,37,37,37
+17	2523	T	7	,.,,.,,	EIGKDIG	0,0,0,0,0,0,0	37,37,37,37,37,37,37
+17	2524	C	6	,,,.,,	HJIELH	0,0,0,0,0,0	37,37,37,37,37,37
+17	2525	A	8	,.,,.,,^],	C.ED3HB<	0,0,0,0,0,0,0,1	37,37,37,37,37,37,37,37
+17	2526	C	9	,.,,.,,,^],	H=HIEKKF@	0,0,0,0,0,0,0,1,0	37,37,37,37,37,37,37,37,37
+17	2527	T	9	,.,,.,,,,	E>GJLG?:E	0,0,0,0,0,0,0,1,0	37,37,37,37,37,37,37,37,37
+17	2528	G	9	,.,,.,,,,	EEIIELIIB	0,0,0,0,0,0,0,1,0	37,37,37,37,37,37,37,37,37
+17	2529	C	9	,.,,.,,,,	FFIH=KFIB	0,0,0,0,0,0,0,1,0	37,37,37,37,37,37,37,37,37
+17	2530	A	9	,$.,,.,,,,	?9DGGIFBB	0,0,0,0,0,0,0,1,0	37,37,37,37,37,37,37,37,37
+17	2531	T	8	.,,.,,,,	DFJGIAEA	0,0,0,0,0,0,1,0	37,37,37,37,37,37,37,37
+17	2532	T	8	.,,.,,,,	@GJBJBHC	0,0,0,0,0,0,1,0	37,37,37,37,37,37,37,37
+17	2533	C	9	.$,,.,,,,^],	>DIEIE>@B	0,0,0,0,0,0,1,0,1	37,37,37,37,37,37,37,37,37
+17	2534	C	8	,,.,,,,,	GHBKGKDE	0,0,0,0,0,1,0,1	37,37,37,37,37,37,37,37
+17	2535	A	8	,,.,,,,,	FKIKJCGF	0,0,0,0,0,1,0,1	37,37,37,37,37,37,37,37
+17	2536	G	8	,,.,,,,,	CIFICJ@H	0,0,0,0,0,1,0,1	37,37,37,37,37,37,37,37
+17	2537	C	8	,$,.,,,,,	>IBJHICG	0,0,0,0,0,1,0,1	37,37,37,37,37,37,37,37
+17	2538	C	7	,.,,,,,	F6J2E@F	0,0,0,0,1,0,1	37,37,37,37,37,37,37
+17	2539	C	7	,.,,,,,	?BC@;6A	0,0,0,0,1,0,1	37,37,37,37,37,37,37
+17	2540	G	7	,.,,,,,	JAJGJFG	0,0,0,0,1,0,1	37,37,37,37,37,37,37
+17	2541	G	7	,.,,,,,	E9IE@CH	0,0,0,0,1,0,1	37,37,37,37,37,37,37
+17	2542	T	7	,.,,,,,	ICHH>HH	0,0,0,0,1,0,1	37,37,37,37,37,37,37
+17	2543	G	7	,.,,,,,	HEIILEJ	0,0,0,0,1,0,1	37,37,37,37,37,37,37
+17	2544	A	8	,.,,,,,^].	F9GEIEDB	0,0,0,0,1,0,1,1	37,37,37,37,37,37,37,37
+17	2545	C	8	,.,,,,,.	G?IGKDJC	0,0,0,0,1,0,1,1	37,37,37,37,37,37,37,37
+17	2546	A	8	,.$,,,,,.	I1IHJEGF	0,0,0,0,1,0,1,1	37,37,37,37,37,37,37,37
+17	2547	G	7	,,,,,,.	HHHLBGG	0,0,0,1,0,1,1	37,37,37,37,37,37,37
+17	2548	A	7	,,,,,,.	FIGLHJF	0,0,0,1,0,1,1	37,37,37,37,37,37,37
+17	2549	G	7	,,,,,,.	AFGI=IH	0,0,0,1,0,1,1	37,37,37,37,37,37,37
+17	2550	T	7	,,,,,,.	CFFJBHF	0,0,0,1,0,1,1	37,37,37,37,37,37,37
+17	2551	G	7	,$,,,,,.	@F>M>KH	0,0,0,1,0,1,1	37,37,37,37,37,37,37
+17	2552	A	6	,,,,,.	HHKEIG	0,0,1,0,1,1	37,37,37,37,37,37
+17	2553	G	6	,,,,,.	DFIEIG	0,0,1,0,1,1	37,37,37,37,37,37
+17	2554	T	6	,,,,,.	C<FCFF	0,0,1,0,1,1	37,37,37,37,37,37
+17	2555	C	6	,$,,,,.	BHLCHI	0,0,1,0,1,1	37,37,37,37,37,37
+17	2556	A	5	,,,,.	>HF>G	0,1,0,1,1	37,37,37,37,37
+17	2557	C	5	,,,,.	GKDLH	0,1,0,1,1	37,37,37,37,37
+17	2558	T	6	,,,,.^],	DJGHJD	0,1,0,1,1,0	37,37,37,37,37,37
+17	2559	G	6	,,,,.,	DLBHIE	0,1,0,1,1,0	37,37,37,37,37,37
+17	2560	T	6	,,,,.,	BECFGD	0,1,0,1,1,0	37,37,37,37,37,37
+17	2561	C	6	,$,,,.,	?JC<JI	0,1,0,1,1,0	37,37,37,37,37,37
+17	2562	T	5	,,,.,	I@9IA	1,0,1,1,0	37,37,37,37,37
+17	2563	C	5	,,,.,	EFCIF	1,0,1,1,0	37,37,37,37,37
+17	2564	A	6	g,gG,^].	KFFBD>	1,0,1,1,0,0	37,37,37,37,37,37
+17	2565	A	6	,,,.,.	HFEIF>	1,0,1,1,0,0	37,37,37,37,37,37
+17	2566	A	6	,,,.,.	HHGHF?	1,0,1,1,0,0	37,37,37,37,37,37
+17	2567	A	6	,,,.,.	BGFHFA	1,0,1,1,0,0	37,37,37,37,37,37
+17	2568	A	6	,,,.,.	HGEICB	1,0,1,1,0,0	37,37,37,37,37,37
+17	2569	A	7	,,,.,.^],	KKJIHEE	1,0,1,1,0,0,0	37,37,37,37,37,37,37
+17	2570	G	7	,,,.,.,	KDKLJJA	1,0,1,1,0,0,0	37,37,37,37,37,37,37
+17	2571	A	7	,,,.,.,	IFFGCH?	1,0,1,1,0,0,0	37,37,37,37,37,37,37
+17	2572	A	7	,,,.,.,	GGEIBH<	1,0,1,1,0,0,0	37,37,37,37,37,37,37
+17	2573	A	7	,,,.,.,	LLJFCID	1,0,1,1,0,0,0	37,37,37,37,37,37,37
+17	2574	G	7	,,,.,.,	LEJLGHE	1,0,1,1,0,0,0	37,37,37,37,37,37,37
+17	2575	G	8	,,,.,.,^].	KKJJKIHA	1,0,1,1,0,0,0,0	37,37,37,37,37,37,37,37
+17	2576	A	8	,,,.,.,.	IFHGD3CC	1,0,1,1,0,0,0,0	37,37,37,37,37,37,37,37
+17	2577	A	8	,,,.,.,.	LKKIJIGD	1,0,1,1,0,0,0,0	37,37,37,37,37,37,37,37
+17	2578	G	8	,,,.,.,.	MDIKMMIH	1,0,1,1,0,0,0,0	37,37,37,37,37,37,37,37
+17	2579	A	8	,,,.,.,.	IFFIFIFF	1,0,1,1,0,0,0,0	37,37,37,37,37,37,37,37
+17	2580	A	8	,,,.,.,.	GFBIGGFE	1,0,1,1,0,0,0,0	37,37,37,37,37,37,37,37
+17	2581	A	9	,,,.,.,.^].	KIGIGIFFD	1,0,1,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37
+17	2582	T	9	,,,.,.,..	D@FFAJEGB	1,0,1,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37
+17	2583	A	9	,,,.,.,..	HFFIFIFDD	1,0,1,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37
+17	2584	A	9	,,,.,.,..	GFHEH>EGF	1,0,1,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37
+17	2585	A	9	,,,.,.,..	MHIGC>HEG	1,0,1,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37
+17	2586	G	9	,,,.,.,..	MFKHLGGJJ	1,0,1,1,0,0,0,0,0	37,37,37,37,37,37,37,37,37
+17	2587	A	10	,,,.,.,..^>.	GFFJFJ>GH?	1,0,1,1,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29
+17	2588	A	11	,,,.,.,...^].	GFHIDICDG?;	1,0,1,1,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37
+17	2589	A	12	,,,.,.,....^].	HEEIDJ?IHB:=	1,0,1,1,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37
+17	2590	A	12	,,,.,.,.....	GIEKEKFHH@>>	1,0,1,1,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37
+17	2591	C	12	,,,.,.,.....	HJIIKK>HIAED	1,0,1,1,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37
+17	2592	A	12	,,,.,.,.....	GFFHFJ=HJEED	1,0,1,1,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37
+17	2593	A	12	,,,.,.,.....	GFGIG?DDI;CD	1,0,1,1,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37
+17	2594	A	12	,,,.,.,.....	JIGJHJ@II=DD	1,0,1,1,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37
+17	2595	T	13	,,,.,.,.....^].	HAFH@K;HIEFF?	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2596	A	13	,,,.,.,......	HEEJFBFDHFECA	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2597	A	13	,,,.,.,......	GEEIGJBEJADFB	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2598	A	13	,,,.,.,......	HEFJGIFGJ7GDB	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2599	A	13	,,,.,.,......	HEEJHJBIJ8GGE	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2600	A	13	,,,.,.,......	JHIJHH<HJ6HFE	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2601	T	13	,,,.,.,......	HDCIFIBCI=GFE	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2602	A	13	,,,.,.,......	DDDIEJ<FHFFCD	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2603	A	13	,,,.,.,......	HHHIIIHHJ8@FF	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2604	T	13	,,,.,.,......	FHFHDHBHKDGBE	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2605	A	13	,,,.,.,......	LGJGIIHDHDEEE	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2606	G	13	,,,.,.,......	IGHLHMI<MD<KK	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2607	T	13	,,,.,.,......	IFHHIHGEG3<FF	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2608	G	13	,,,.,.,......	JJJMIMIGLGHJH	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2609	C	13	,,,.,.,......	JIICCJ=GK8DGJ	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2610	A	13	,,,.,.,......	GIIJIJAGKFHGF	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2611	G	13	,,,.,.,......	JIJMJM:IMKEJI	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2612	A	13	,,,.,.,......	FHFKCK6DJHFGF	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2613	C	13	,,,.,.,......	IIJJJJEHJEJHI	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2614	A	13	,,,.,.,......	FDEJGJ@HJ=DHE	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2615	A	13	,,,.,.,......	EDFHFADGJACFH	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2616	A	13	,,,.,.,......	EDEIFF4IC;5GH	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2617	A	13	,,,.,.,......	IIJIIKIHKCIEJ	1,0,1,1,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37
+17	2618	G	15	,,,.,.,......^].^],	GIILGMIJMIKKKBB	1,0,1,1,0,0,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37,37,37
+17	2619	G	15	,,,.,.,.......,	GIIFJJJHJB?FI?B	1,0,1,1,0,0,0,0,0,0,0,0,0,0,0	37,37,37,37,37,37,37,37,37,29,37,37,37,37,37
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+17	3770	C	14	,............,	@JEIAGJ>7KKLHI	1,0,0,0,0,0,1,1,10,0,0,0,0,0	37,0,23,0,37,0,0,20,10,37,37,0,37,37
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+17	3788	G	13	..........,,.	BGI=G;EAHJGAH	0,0,0,0,1,10,0,0,0,0,0,0,0	23,0,37,0,0,10,37,37,0,37,37,37,0
+17	3789	G	13	.........,,.,	FHDD4B@<HJFH9	0,0,0,1,1,0,0,0,0,0,0,0,0	23,0,0,0,20,37,37,0,37,37,37,0,37
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+17	3791	T	15	...........,,.,	FA>@E:FHEHEGAF=	0,0,0,0,1,1,10,0,0,0,0,0,0,0,0	23,0,37,0,0,20,10,37,37,0,37,37,37,0,37
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+17	3793	A	15	...........,,.,	@FC@N?BJGEFCHJ=	0,0,0,0,1,1,10,0,0,0,0,0,0,0,0	23,0,37,0,0,20,10,37,37,0,37,37,37,0,37
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+17	3800	C	14	..........,,.,	CKFJ66KKJKLKJB	0,0,0,1,1,10,0,0,0,0,0,0,0,0	0,37,0,0,20,10,37,37,0,37,37,37,0,37
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+17	3803	G	13	.........,,.,	?90C8HGJHKAI=	0,0,0,1,1,0,0,0,0,0,0,0,0	0,37,0,0,20,37,37,0,37,37,37,0,37
+17	3804	A	13	.........,,.,	C<FG4J9HHFIK>	0,0,0,1,1,0,0,0,0,0,0,0,0	0,37,0,0,20,37,37,0,37,37,37,0,37
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+17	3816	A	11	......,,.,,	3DIHCHCIK?E	1,10,0,0,0,0,0,0,0,0,0	20,10,37,37,0,37,37,37,0,37,37
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+17	3994	T	15	,,.,,,.....,.,^F.	CGAIHHGHKJIFI9@	3,0,0,1,1,1,0,1,0,1,0,1,0,3,0	37,18,37,37,37,37,37,37,23,37,37,37,0,37,0
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+17	3996	A	14	,,,,,.....,.,.	CIJJIC?HDGIG?B	3,0,1,1,1,0,1,0,1,0,1,0,3,0	37,18,37,37,37,37,37,23,37,37,37,0,37,0
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+17	3999	G	14	a,,,,.....,.,.	FHLIJGHL:L1HJG	3,0,1,1,1,0,1,0,1,0,1,0,3,0	37,18,37,37,37,37,37,23,37,37,37,0,37,0
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+17	4012	A	11	,,,....,.,.	CCB0B.A=DFJ	1,1,1,0,1,0,0,1,0,3,0	37,37,37,37,37,23,37,37,0,37,0
+17	4013	C	12	,$,$,.....,.,.	@@G@<G>CIJFF	1,1,1,0,1,0,1,0,1,0,3,0	37,37,37,37,37,23,37,37,37,0,37,0
+17	4014	A	9	,.....,..	ECGJFJ0IK	1,0,1,0,1,0,1,0,0	37,37,37,23,37,37,37,0,0
+17	4015	C	9	,.....,..	>I8JDHLJG	1,0,1,0,1,0,1,0,0	37,37,37,23,37,37,37,0,0
+17	4016	C	10	,$.....,.,.	;4>K:FGK3K	1,0,1,0,1,0,1,0,3,0	37,37,37,23,37,37,37,0,37,0
+17	4017	C	6	..,.,.	=F=K?K	0,0,1,0,3,0	23,37,37,0,37,0
+17	4018	G	9	.....,.,.	<4C9BDC?@	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4019	C	10	.$.....,.,.	.J2KHGBKMJ	0,0,1,0,1,0,1,0,3,0	37,37,37,23,37,37,37,0,37,0
+17	4020	T	9	.....,.,.	;CLIFIL4K	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4021	A	8	.....,..	D;G<I=GH	0,1,0,1,0,1,0,0	37,37,23,37,37,37,0,0
+17	4022	C	8	....,.,.	6F.DLKNG	1,0,1,0,1,0,3,0	37,23,37,37,37,0,37,0
+17	4023	A	9	.....,.,.	EHG:JEI2K	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4024	C	9	.....,.,.	JBKBHKI/G	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4025	T	8	.....,..	IIAIIIMK	0,1,0,1,0,1,0,0	37,37,23,37,37,37,0,0
+17	4026	C	9	.....,.,.	9@LDF7K0J	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4027	C	9	.....,.,.	>9MBILKNK	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4028	T	9	.....,.,.	.CL0DHH@L	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4029	T	9	.....,.,.	=FHGFIHJI	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4030	C	9	.....,.,.	F8JJBCK:K	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4031	T	9	.....,.,.	AKKHJIL<L	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4032	T	9	.....,.,.	;@EAC:HIH	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4033	A	8	....,.,.	6H.@KIEH	1,0,1,0,1,0,3,0	37,23,37,37,37,0,37,0
+17	4034	G	9	.....,.,.	JFB3DKD<I	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4035	G	9	...T.,.,.	/;L.CJMKJ	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4036	G	8	.....,..	.EE2A7GJ	0,1,0,1,0,1,0,0	37,37,23,37,37,37,0,0
+17	4037	C	9	.....,.,.	47HIF;LNJ	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4038	T	9	.....,.,.	.CJHFHJ4L	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4039	G	8	.....,..	/>L>FEKJ	0,1,0,1,0,1,0,0	37,37,23,37,37,37,0,0
+17	4040	A	9	.....,.,.	B?KHHHICL	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4041	T	9	.....,.,.	F;FCEHJGH	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4042	A	9	.....,.,.	7DH?EHD<I	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4043	T	9	.....,.,.	?=70CCJEH	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4044	T	9	.....,.,.	3DBEEIE7I	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4045	C	9	.....,.,.	.<K:BJHDE	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4046	C	9	.....,.,.	@B8@FKKHL	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4047	A	9	.....,.,.	9EI9JAK;K	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4048	C	9	.....,.,.	B=IGCCJ3H	0,1,0,1,0,1,0,3,0	37,37,23,37,37,37,0,37,0
+17	4049	G	8	.$...,.,.	77@9BEEA	0,1,0,0,1,0,3,0	37,37,23,37,37,0,37,0
+17	4050	C	8	....,.,.	;IBAIKEK	1,0,1,0,1,0,3,0	37,23,37,37,37,0,37,0
+17	4051	A	7	...,.,.	EGDGH?L	0,1,0,1,0,3,0	23,37,37,37,0,37,0
+17	4052	C	7	...,.,.	D8=JHKH	0,1,0,1,0,3,0	23,37,37,37,0,37,0
+17	4053	C	8	....,.,.	.H2=IKAL	1,0,1,0,1,0,3,0	37,23,37,37,37,0,37,0
+17	4054	C	5	.,.,.	:B:CL	0,1,0,3,0	37,37,0,37,0
+17	4055	G	8	....,.,.	.A@<:DDA	1,0,1,0,1,0,3,0	37,23,37,37,37,0,37,0
+17	4056	C	8	....,.,.	.@B@JKKK	1,0,1,0,1,0,3,0	37,23,37,37,37,0,37,0
+17	4057	T	7	...,.,.	G;AEDBL	0,1,0,1,0,3,0	23,37,37,37,0,37,0
+17	4058	A	6	.$.,.,.	AC>HII	0,0,1,0,3,0	23,37,37,0,37,0
+17	4059	C	6	..,.,.	B?J8GH	1,0,1,0,3,0	37,37,37,0,37,0
+17	4060	A	6	..,.,.	FG?IHL	1,0,1,0,3,0	37,37,37,0,37,0
+17	4061	C	6	..,.,.	F;HF0H	1,0,1,0,3,0	37,37,37,0,37,0
+17	4062	T	5	..,..	FFHJJ	1,0,1,0,0	37,37,37,0,0
+17	4063	C	6	..,.,.	F9FJDK	1,0,1,0,3,0	37,37,37,0,37,0
+17	4064	C	6	..,.,.	B?EKLL	1,0,1,0,3,0	37,37,37,0,37,0
+17	4065	T	6	.$.,.,.	>BCBAJ	1,0,1,0,3,0	37,37,37,0,37,0
+17	4066	T	5	.,.,.	>GGDI	0,1,0,3,0	37,37,0,37,0
+17	4067	C	5	.,.,.	?HECK	0,1,0,3,0	37,37,0,37,0
+17	4068	T	5	.,.,.	FFIJL	0,1,0,3,0	37,37,0,37,0
+17	4069	T	5	.,.,.	>FFHD	0,1,0,3,0	37,37,0,37,0
+17	4070	A	5	.,.,.	=F>?F	0,1,0,3,0	37,37,0,37,0
+17	4071	G	5	.,.,.	:EI>E	0,1,0,3,0	37,37,0,37,0
+17	4072	G	4	,.,.	FH7I	1,0,3,0	37,0,37,0
+17	4073	G	5	.,.,.	6DG;E	0,1,0,3,0	37,37,0,37,0
+17	4074	C	5	.,.,.	/GBLA	0,1,0,3,0	37,37,0,37,0
+17	4075	T	5	.,.,.	@FHFL	0,1,0,3,0	37,37,0,37,0
+17	4076	G	5	.,$.,.	7BGJI	0,1,0,3,0	37,37,0,37,0
+17	4077	A	4	..,.	>FCG	0,0,3,0	37,0,37,0
+17	4078	T	4	..,.	>GGG	0,0,3,0	37,0,37,0
+17	4079	A	4	..,.	:F7F	0,0,3,0	37,0,37,0
+17	4080	T	3	...	@EH	0,0,0	37,0,0
+17	4081	T	4	.$.,.	2=@?	0,0,3,0	37,0,37,0
+17	4082	C	3	.,.	EHD	0,3,0	0,37,0
+17	4083	C	3	.$,.	AIA	0,3,0	0,37,0
+17	4084	A	2	,.	FJ	3,0	37,0
+17	4085	C	2	,.	=C	3,0	37,0
+17	4086	G	2	,.	C7	3,0	37,0
+17	4087	C	2	,$.	@G	3,0	37,0
+17	4088	A	1	.	H	0	0
+17	4089	C	1	.	E	0	0
+17	4090	C	1	.	B	0	0
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--- a/test-data/samtools_mpileup_out_3.pileup	Tue Sep 21 09:33:51 2021 +0000
+++ b/test-data/samtools_mpileup_out_3.pileup	Tue Sep 28 16:15:20 2021 +0000
@@ -1,43 +1,43 @@
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-phiX174	1419	G	10	..........	"""""'&'%$
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+phiX174	1440	C	10	..........	"""""""""!	PDFDFFFFFF	30,29,29,28,28,27,26,25,24,23
+phiX174	1441	T	10	..........	""""""""#!	PDFDFFFFFF	31,30,30,29,29,28,27,26,25,24
+phiX174	1442	A	10	..........	$$$%%%&&%!	PDFDFFFFFF	32,31,31,30,30,29,28,27,26,25
+phiX174	1443	A	10	.-1C.-1C..-1C......	"""""""""!	PDFDFFFFFF	33,32,32,31,31,30,29,28,27,26
+phiX174	1444	C	10	**.*......	!!"!"""""!	PDFDFFFFFF	34,33,33,32,32,31,30,29,28,27
+phiX174	1445	C	10	..........	!!&!%%%&%!	PDFDFFFFFF	34,33,34,32,33,32,31,30,29,28
+phiX174	1446	C	10	..........	!!"!"""""!	PDFDFFFFFF	35,34,35,33,34,33,32,31,30,29
+phiX174	1447	T	10	.$..$.......	!!#!"""""!	PDFDFFFFFF	36,35,36,34,35,34,33,32,31,30
+phiX174	1448	A	8	.$..$.....	!!#%%$$!	DDFFFFFF	36,35,36,35,34,33,32,31
+phiX174	1449	A	6	.$.$....	!""""!	DFFFFF	36,36,35,34,33,32
+phiX174	1450	T	4	.$...	"""!	FFFF	36,35,34,33
+phiX174	1451	G	3	.$..	#"!	FFF	36,35,34
+phiX174	1452	A	2	.$.	"!	FF	36,35
+phiX174	1453	G	1	.$	!	F	36