comparison macros.xml @ 5:586f9e1cdb2b draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_rmdup commit ca0d1d44099fd21e0f8214102f4d8a2fd2d054d6

4:9129584416e2

            <requirement type="package" version="1.3.1">samtools</requirement>
            <yield/>
        </requirements>
    </xml>
    <token name="@TOOL_VERSION@">1.3.1</token>
    <xml name="citations">
        <citations>
            <citation type="bibtex">
                @misc{SAM_def,
                title={Definition of SAM/BAM format},

5:586f9e1cdb2b

            <requirement type="package" version="1.3.1">samtools</requirement>
            <yield/>
        </requirements>
    </xml>
    <token name="@TOOL_VERSION@">1.3.1</token>
    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
    <xml name="filter_options">
        <option value="1">Read is paired</option>
        <option value="2">Read is mapped in a proper pair</option>
        <option value="4">The read is unmapped</option>
        <option value="8">The mate is unmapped</option>
        <option value="16">Read strand</option>
        <option value="32">Mate strand</option>
        <option value="48">Read is the first in a pair</option>
        <option value="64">Read is the second in a pair</option>
        <option value="256">The alignment or this read is not primary</option>
        <option value="512">The read fails platform/vendor quality checks</option>
        <option value="768">The read is a PCR or optical duplicate</option>
        <option value="1024">Supplementary alignment</option>
    </xml>
    <xml name="citations">
        <citations>
            <citation type="bibtex">
                @misc{SAM_def,
                title={Definition of SAM/BAM format},