Mercurial > repos > devteam > samtools_sort
comparison samtools_sort.xml @ 3:e613c1ad4c4c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_sort commit 64305ae905dc79e44b478203000add73598bcca1
| author | iuc |
|---|---|
| date | Sat, 06 Apr 2019 06:37:47 -0400 |
| parents | f56bdb93ae58 |
| children | 6c2c1836728b |
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| 2:f56bdb93ae58 | 3:e613c1ad4c4c |
|---|---|
| 1 <tool id="samtools_sort" name="Samtools sort" version="2.0.2"> | 1 <tool id="samtools_sort" name="Samtools sort" profile="18.01" version="2.0.3"> |
| 2 <description>order of storing aligned sequences</description> | 2 <description>order of storing aligned sequences</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
| 24 -T sorttmp | 24 -T sorttmp |
| 25 '${input1}' | 25 '${input1}' |
| 26 > '${output1}' | 26 > '${output1}' |
| 27 ]]></command> | 27 ]]></command> |
| 28 <inputs> | 28 <inputs> |
| 29 <param name="input1" type="data" format="sam,bam,cram" label="BAM File" /> | 29 <param name="input1" type="data" format="sam,unsorted.bam,cram" label="BAM File" /> |
| 30 <conditional name="prim_key_cond"> | 30 <conditional name="prim_key_cond"> |
| 31 <param name="prim_key_select" type="select" label="Primary sort key"> | 31 <param name="prim_key_select" type="select" label="Primary sort key"> |
| 32 <option value="">coordinate</option> | 32 <option value="">coordinate</option> |
| 33 <option value="-n">name (-n)</option> | 33 <option value="-n">name (-n)</option> |
| 34 <option value="-t">tag (-t)</option> | 34 <option value="-t">tag (-t)</option> |