annotate test-data/samtools_stats_out2.tab @ 1:8cfc17e27132 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_stats commit a1517c9d22029095120643bbe2c8fa53754dd2b7
author devteam
date Wed, 11 Nov 2015 12:55:15 -0500
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1 # This file was produced by samtools stats (1.2+htslib-1.2.1) and can be plotted using plot-bamstats
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2 # The command line was: stats --coverage 1,1000,1 --GC-depth 20000.0 --insert-size 8000 --most-inserts 0.99 --trim-quality 0 --ref-seq /Users/anton/galaxy-git/database/files/000/dataset_9.dat /Users/anton/galaxy-git/database/files/000/dataset_10.dat
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3 # CHK, Checksum [2]Read Names [3]Sequences [4]Qualities
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4 # CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
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5 CHK 1bd20fd8 58ad2167 29883386
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6 # Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
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7 SN raw total sequences: 200
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8 SN filtered sequences: 0
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9 SN sequences: 200
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10 SN is sorted: 1
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11 SN 1st fragments: 100
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12 SN last fragments: 100
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13 SN reads mapped: 25
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14 SN reads mapped and paired: 0 # paired-end technology bit set + both mates mapped
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15 SN reads unmapped: 175
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16 SN reads properly paired: 0 # proper-pair bit set
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17 SN reads paired: 200 # paired-end technology bit set
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18 SN reads duplicated: 0 # PCR or optical duplicate bit set
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19 SN reads MQ0: 6 # mapped and MQ=0
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20 SN reads QC failed: 0
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21 SN non-primary alignments: 0
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22 SN total length: 50200 # ignores clipping
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23 SN bases mapped: 6275 # ignores clipping
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24 SN bases mapped (cigar): 6275 # more accurate
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25 SN bases trimmed: 0
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26 SN bases duplicated: 0
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27 SN mismatches: 591 # from NM fields
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28 SN error rate: 9.418327e-02 # mismatches / bases mapped (cigar)
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29 SN average length: 251
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30 SN maximum length: 251
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31 SN average quality: 34.7
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32 SN insert size average: 0.0
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33 SN insert size standard deviation: 0.0
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34 SN inward oriented pairs: 0
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35 SN outward oriented pairs: 0
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36 SN pairs with other orientation: 0
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37 SN pairs on different chromosomes: 0
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38 # First Fragment Qualitites. Use `grep ^FFQ | cut -f 2-` to extract this part.
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39 # Columns correspond to qualities and rows to cycles. First column is the cycle number.
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parents:
diff changeset
799 MPC 251 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 2 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 3 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
800 MPC 252 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
801 # GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part.
0d71d9467847 Uploaded
devteam
parents:
diff changeset
802 GCF 21.86 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
803 GCF 44.22 2
0d71d9467847 Uploaded
devteam
parents:
diff changeset
804 GCF 44.97 8
0d71d9467847 Uploaded
devteam
parents:
diff changeset
805 GCF 45.48 4
0d71d9467847 Uploaded
devteam
parents:
diff changeset
806 GCF 45.98 3
0d71d9467847 Uploaded
devteam
parents:
diff changeset
807 GCF 46.48 5
0d71d9467847 Uploaded
devteam
parents:
diff changeset
808 GCF 46.98 2
0d71d9467847 Uploaded
devteam
parents:
diff changeset
809 GCF 47.49 3
0d71d9467847 Uploaded
devteam
parents:
diff changeset
810 GCF 47.99 12
0d71d9467847 Uploaded
devteam
parents:
diff changeset
811 GCF 48.49 13
0d71d9467847 Uploaded
devteam
parents:
diff changeset
812 GCF 48.99 9
0d71d9467847 Uploaded
devteam
parents:
diff changeset
813 GCF 49.50 2
0d71d9467847 Uploaded
devteam
parents:
diff changeset
814 GCF 50.25 3
0d71d9467847 Uploaded
devteam
parents:
diff changeset
815 GCF 51.01 6
0d71d9467847 Uploaded
devteam
parents:
diff changeset
816 GCF 51.51 4
0d71d9467847 Uploaded
devteam
parents:
diff changeset
817 GCF 52.01 1
0d71d9467847 Uploaded
devteam
parents:
diff changeset
818 GCF 52.51 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
819 GCF 53.02 1
0d71d9467847 Uploaded
devteam
parents:
diff changeset
820 # GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part.
0d71d9467847 Uploaded
devteam
parents:
diff changeset
821 GCL 21.86 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
822 GCL 44.22 2
0d71d9467847 Uploaded
devteam
parents:
diff changeset
823 GCL 44.97 8
0d71d9467847 Uploaded
devteam
parents:
diff changeset
824 GCL 45.48 4
0d71d9467847 Uploaded
devteam
parents:
diff changeset
825 GCL 45.98 3
0d71d9467847 Uploaded
devteam
parents:
diff changeset
826 GCL 46.48 5
0d71d9467847 Uploaded
devteam
parents:
diff changeset
827 GCL 46.98 2
0d71d9467847 Uploaded
devteam
parents:
diff changeset
828 GCL 47.49 3
0d71d9467847 Uploaded
devteam
parents:
diff changeset
829 GCL 47.99 12
0d71d9467847 Uploaded
devteam
parents:
diff changeset
830 GCL 48.49 13
0d71d9467847 Uploaded
devteam
parents:
diff changeset
831 GCL 48.99 9
0d71d9467847 Uploaded
devteam
parents:
diff changeset
832 GCL 49.50 2
0d71d9467847 Uploaded
devteam
parents:
diff changeset
833 GCL 50.25 3
0d71d9467847 Uploaded
devteam
parents:
diff changeset
834 GCL 51.01 6
0d71d9467847 Uploaded
devteam
parents:
diff changeset
835 GCL 51.51 4
0d71d9467847 Uploaded
devteam
parents:
diff changeset
836 GCL 52.01 1
0d71d9467847 Uploaded
devteam
parents:
diff changeset
837 GCL 52.51 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
838 GCL 53.02 1
0d71d9467847 Uploaded
devteam
parents:
diff changeset
839 # ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle, and A,C,G,T counts [%]
0d71d9467847 Uploaded
devteam
parents:
diff changeset
840 GCC 1 21.50 29.50 33.50 15.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
841 GCC 2 30.00 16.00 11.00 43.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
842 GCC 3 33.00 25.00 9.00 33.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
843 GCC 4 17.00 29.00 13.00 41.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
844 GCC 5 37.00 22.00 12.00 29.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
845 GCC 6 36.00 26.00 17.00 21.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
846 GCC 7 29.50 13.50 31.50 25.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
847 GCC 8 50.50 14.50 19.50 15.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
848 GCC 9 17.00 33.00 18.00 32.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
849 GCC 10 37.00 14.00 21.00 28.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
850 GCC 11 20.50 14.50 29.50 35.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
851 GCC 12 30.00 24.00 22.00 24.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
852 GCC 13 27.00 15.00 21.00 37.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
853 GCC 14 24.00 22.00 26.00 28.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
854 GCC 15 25.50 20.50 24.50 29.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
855 GCC 16 31.00 15.00 20.00 34.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
856 GCC 17 28.00 25.00 14.00 33.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
857 GCC 18 30.50 28.50 19.50 21.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
858 GCC 19 29.00 26.00 21.00 24.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
859 GCC 20 22.50 23.50 17.50 36.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
860 GCC 21 35.50 17.50 19.50 27.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
861 GCC 22 37.50 28.50 15.50 18.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
862 GCC 23 31.00 19.00 13.00 37.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
863 GCC 24 37.00 12.00 22.00 29.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
864 GCC 25 35.50 22.50 17.50 24.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
865 GCC 26 33.50 18.50 15.50 32.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
866 GCC 27 34.50 14.50 25.50 25.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
867 GCC 28 31.00 14.00 24.00 31.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
868 GCC 29 30.00 27.00 24.00 19.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
869 GCC 30 31.00 20.00 14.00 35.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
870 GCC 31 33.50 29.50 13.50 23.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
871 GCC 32 42.50 20.50 19.50 17.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
872 GCC 33 25.50 23.50 14.50 36.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
873 GCC 34 39.50 16.50 20.50 23.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
874 GCC 35 32.50 23.50 21.50 22.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
875 GCC 36 42.00 25.00 16.00 17.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
876 GCC 37 38.00 17.00 19.00 26.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
877 GCC 38 24.00 26.00 25.00 25.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
878 GCC 39 22.50 41.50 18.50 17.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
879 GCC 40 32.00 16.00 21.00 31.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
880 GCC 41 33.00 28.00 19.00 20.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
881 GCC 42 30.50 25.50 19.50 24.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
882 GCC 43 35.00 29.00 15.00 21.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
883 GCC 44 20.00 27.00 22.00 31.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
884 GCC 45 40.50 21.50 21.50 16.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
885 GCC 46 26.50 20.50 22.50 30.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
886 GCC 47 38.50 29.50 16.50 15.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
887 GCC 48 27.50 24.50 17.50 30.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
888 GCC 49 28.50 32.50 10.50 28.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
889 GCC 50 46.50 20.50 9.50 23.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
890 GCC 51 34.50 28.50 13.50 23.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
891 GCC 52 41.50 23.50 20.50 14.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
892 GCC 53 20.00 28.00 26.00 26.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
893 GCC 54 31.50 18.50 24.50 25.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
894 GCC 55 30.50 22.50 16.50 30.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
895 GCC 56 33.50 22.50 13.50 30.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
896 GCC 57 23.00 24.00 23.00 30.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
897 GCC 58 25.00 37.00 19.00 19.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
898 GCC 59 34.00 23.00 24.00 19.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
899 GCC 60 29.00 28.00 17.00 26.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
900 GCC 61 25.50 23.50 24.50 26.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
901 GCC 62 31.50 22.50 16.50 29.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
902 GCC 63 27.50 28.50 25.50 18.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
903 GCC 64 33.50 21.50 25.50 19.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
904 GCC 65 35.50 19.50 18.50 26.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
905 GCC 66 34.00 25.00 15.00 26.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
906 GCC 67 37.00 23.00 19.00 21.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
907 GCC 68 36.50 29.50 13.50 20.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
908 GCC 69 38.50 19.50 20.50 21.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
909 GCC 70 38.50 16.50 18.50 26.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
910 GCC 71 25.50 38.50 21.50 14.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
911 GCC 72 29.00 29.00 25.00 17.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
912 GCC 73 32.50 20.50 21.50 25.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
913 GCC 74 28.50 32.50 12.50 26.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
914 GCC 75 41.50 12.50 18.50 27.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
915 GCC 76 24.50 29.50 23.50 22.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
916 GCC 77 36.00 21.00 18.00 25.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
917 GCC 78 27.00 34.00 22.00 17.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
918 GCC 79 21.50 26.50 25.50 26.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
919 GCC 80 34.00 19.00 28.00 19.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
920 GCC 81 17.00 26.00 26.00 31.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
921 GCC 82 31.00 30.00 23.00 16.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
922 GCC 83 31.50 26.50 12.50 29.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
923 GCC 84 19.00 41.00 21.00 19.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
924 GCC 85 37.50 24.50 16.50 21.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
925 GCC 86 15.00 48.00 15.00 22.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
926 GCC 87 41.00 16.00 18.00 25.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
927 GCC 88 23.50 27.50 27.50 21.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
928 GCC 89 26.50 27.50 26.50 19.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
929 GCC 90 18.50 23.50 24.50 33.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
930 GCC 91 27.00 32.00 22.00 19.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
931 GCC 92 23.50 17.50 27.50 31.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
932 GCC 93 25.50 37.50 15.50 21.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
933 GCC 94 27.00 17.00 24.00 32.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
934 GCC 95 26.50 37.50 14.50 21.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
935 GCC 96 29.50 25.50 16.50 28.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
936 GCC 97 29.00 31.00 21.00 19.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
937 GCC 98 18.00 33.00 22.00 27.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
938 GCC 99 24.50 33.50 24.50 17.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
939 GCC 100 24.50 16.50 24.50 34.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
940 GCC 101 25.00 40.00 19.00 16.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
941 GCC 102 17.50 17.50 32.50 32.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
942 GCC 103 31.00 26.00 16.00 27.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
943 GCC 104 26.50 29.50 20.50 23.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
944 GCC 105 34.00 33.00 21.00 12.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
945 GCC 106 23.00 31.00 26.00 20.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
946 GCC 107 17.50 35.50 23.50 23.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
947 GCC 108 24.50 30.50 23.50 21.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
948 GCC 109 17.00 31.00 22.00 30.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
949 GCC 110 16.00 35.00 24.00 25.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
950 GCC 111 24.00 32.00 23.00 21.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
951 GCC 112 37.00 28.00 16.00 19.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
952 GCC 113 19.50 22.50 32.50 25.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
953 GCC 114 17.00 31.00 35.00 17.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
954 GCC 115 29.50 24.50 23.50 22.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
955 GCC 116 22.00 30.00 34.00 14.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
956 GCC 117 27.00 23.00 19.00 31.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
957 GCC 118 25.50 14.50 34.50 25.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
958 GCC 119 22.50 34.50 20.50 22.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
959 GCC 120 17.50 24.50 26.50 31.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
960 GCC 121 27.50 33.50 22.50 16.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
961 GCC 122 17.00 23.00 25.00 35.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
962 GCC 123 23.50 46.50 11.50 18.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
963 GCC 124 9.00 32.00 34.00 25.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
964 GCC 125 24.00 27.00 19.00 30.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
965 GCC 126 26.00 17.00 28.00 29.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
966 GCC 127 26.50 16.50 21.50 35.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
967 GCC 128 18.00 34.00 31.00 17.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
968 GCC 129 25.50 25.50 27.50 21.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
969 GCC 130 25.00 20.00 22.00 33.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
970 GCC 131 17.50 39.50 24.50 18.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
971 GCC 132 21.00 28.00 23.00 28.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
972 GCC 133 13.50 31.50 35.50 19.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
973 GCC 134 24.50 19.50 30.50 25.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
974 GCC 135 16.50 23.50 30.50 29.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
975 GCC 136 28.00 32.00 15.00 25.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
976 GCC 137 22.50 21.50 30.50 25.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
977 GCC 138 14.50 34.50 24.50 26.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
978 GCC 139 20.50 29.50 24.50 25.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
979 GCC 140 17.00 23.00 30.00 30.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
980 GCC 141 20.50 23.50 25.50 30.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
981 GCC 142 18.00 29.00 38.00 15.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
982 GCC 143 22.00 24.00 27.00 27.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
983 GCC 144 21.50 30.50 26.50 21.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
984 GCC 145 22.00 21.00 29.00 28.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
985 GCC 146 25.00 16.00 39.00 20.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
986 GCC 147 26.50 22.50 30.50 20.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
987 GCC 148 12.50 28.50 36.50 22.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
988 GCC 149 26.50 23.50 23.50 26.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
989 GCC 150 14.00 29.00 24.00 33.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
990 GCC 151 19.50 30.50 32.50 17.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
991 GCC 152 18.50 17.50 29.50 34.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
992 GCC 153 22.50 22.50 31.50 23.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
993 GCC 154 22.00 21.00 29.00 28.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
994 GCC 155 21.00 26.00 19.00 34.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
995 GCC 156 14.50 23.50 35.50 26.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
996 GCC 157 22.00 31.00 23.00 24.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
997 GCC 158 22.50 29.50 24.50 23.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
998 GCC 159 17.50 12.50 46.50 23.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
999 GCC 160 24.50 26.50 26.50 22.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1000 GCC 161 13.00 23.00 45.00 19.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1001 GCC 162 31.50 16.50 22.50 29.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1002 GCC 163 19.50 21.50 35.50 23.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1003 GCC 164 29.00 18.00 21.00 32.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1004 GCC 165 14.50 17.50 35.50 32.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1005 GCC 166 17.50 37.50 28.50 16.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1006 GCC 167 16.50 21.50 31.50 30.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1007 GCC 168 14.00 25.00 30.00 31.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1008 GCC 169 18.50 20.50 23.50 37.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1009 GCC 170 19.00 23.00 28.00 30.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1010 GCC 171 20.00 28.00 33.00 19.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1011 GCC 172 19.00 20.00 32.00 29.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1012 GCC 173 24.50 16.50 33.50 25.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1013 GCC 174 17.50 23.50 33.50 25.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1014 GCC 175 33.50 17.50 35.50 13.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1015 GCC 176 16.50 32.50 28.50 22.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1016 GCC 177 19.00 22.00 27.00 32.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1017 GCC 178 16.00 26.00 30.00 28.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1018 GCC 179 18.00 18.00 22.00 42.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1019 GCC 180 21.00 22.00 34.00 23.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1020 GCC 181 20.50 19.50 35.50 24.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1021 GCC 182 32.50 18.50 22.50 26.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1022 GCC 183 24.50 13.50 28.50 33.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1023 GCC 184 15.00 29.00 30.00 26.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1024 GCC 185 15.00 32.00 33.00 20.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1025 GCC 186 22.50 23.50 34.50 19.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1026 GCC 187 19.00 14.00 40.00 27.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1027 GCC 188 27.50 21.50 27.50 23.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1028 GCC 189 17.00 22.00 34.00 27.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1029 GCC 190 23.00 30.00 23.00 24.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1030 GCC 191 25.00 22.00 28.00 25.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1031 GCC 192 34.50 24.50 13.50 27.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1032 GCC 193 18.50 25.50 25.50 30.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1033 GCC 194 18.50 33.50 24.50 23.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1034 GCC 195 16.00 26.00 23.00 35.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1035 GCC 196 21.50 25.50 24.50 28.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1036 GCC 197 20.00 21.00 23.00 36.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1037 GCC 198 17.00 21.00 37.00 25.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1038 GCC 199 20.50 18.50 25.50 35.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1039 GCC 200 21.00 29.00 21.00 29.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1040 GCC 201 27.00 21.00 23.00 29.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1041 GCC 202 21.50 24.50 19.50 34.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1042 GCC 203 21.50 24.50 26.50 27.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1043 GCC 204 27.00 29.00 24.00 20.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1044 GCC 205 19.50 21.50 22.50 36.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1045 GCC 206 26.50 24.50 21.50 27.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1046 GCC 207 22.50 21.50 19.50 36.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1047 GCC 208 14.00 35.00 29.00 22.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1048 GCC 209 16.00 23.00 12.00 49.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1049 GCC 210 18.50 19.50 40.50 21.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1050 GCC 211 26.00 20.00 22.00 32.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1051 GCC 212 21.00 31.00 18.00 30.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1052 GCC 213 24.00 15.00 31.00 30.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1053 GCC 214 17.50 24.50 25.50 32.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1054 GCC 215 26.00 24.00 23.00 27.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1055 GCC 216 21.50 17.50 25.50 35.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1056 GCC 217 26.00 29.00 17.00 28.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1057 GCC 218 20.00 27.00 21.00 32.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1058 GCC 219 17.00 21.00 21.00 41.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1059 GCC 220 25.50 23.50 23.50 27.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1060 GCC 221 21.50 23.50 20.50 34.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1061 GCC 222 21.50 21.50 18.50 38.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1062 GCC 223 20.00 27.00 28.00 25.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1063 GCC 224 22.50 22.50 24.50 30.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1064 GCC 225 14.50 35.50 30.50 19.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1065 GCC 226 20.00 23.00 26.00 31.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1066 GCC 227 20.50 24.50 23.50 31.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1067 GCC 228 33.00 19.00 26.00 22.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1068 GCC 229 22.50 24.50 18.50 34.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1069 GCC 230 21.00 32.00 16.00 31.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1070 GCC 231 23.00 28.00 30.00 19.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1071 GCC 232 23.50 21.50 12.50 42.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1072 GCC 233 21.00 27.00 25.00 27.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1073 GCC 234 16.50 27.50 22.50 33.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1074 GCC 235 20.00 15.00 28.00 37.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1075 GCC 236 28.00 23.00 21.00 28.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1076 GCC 237 20.50 19.50 22.50 37.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1077 GCC 238 21.50 29.50 24.50 24.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1078 GCC 239 20.00 8.00 17.00 55.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1079 GCC 240 28.00 24.00 16.00 32.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1080 GCC 241 22.50 22.50 16.50 38.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1081 GCC 242 29.00 25.00 13.00 33.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1082 GCC 243 22.50 15.50 23.50 38.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1083 GCC 244 20.50 23.50 16.50 39.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1084 GCC 245 28.00 23.00 19.00 30.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1085 GCC 246 21.00 29.00 25.00 25.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1086 GCC 247 32.00 14.00 13.00 41.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1087 GCC 248 18.00 18.00 25.00 39.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1088 GCC 249 25.00 23.00 21.00 31.00
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1089 GCC 250 27.50 22.50 17.50 32.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1090 GCC 251 13.50 20.50 36.50 29.50
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1091 # Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1092 # Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1093 RL 251 200
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1094 # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1095 ID 1 1 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1096 ID 2 1 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1097 ID 4 2 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1098 ID 10 5 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1099 ID 13 1 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1100 ID 14 1 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1101 ID 15 1 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1102 ID 18 1 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1103 ID 21 1 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1104 ID 22 1 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1105 ID 23 2 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1106 ID 24 3 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1107 ID 29 1 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1108 ID 35 2 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1109 ID 38 2 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1110 # Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1111 IC 2 1 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1112 IC 4 2 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1113 IC 5 3 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1114 IC 210 2 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1115 IC 219 1 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1116 IC 220 1 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1117 IC 224 2 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1118 IC 225 2 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1119 IC 226 1 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1120 IC 228 1 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1121 IC 230 1 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1122 IC 233 1 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1123 IC 234 1 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1124 IC 235 1 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1125 IC 236 1 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1126 IC 239 1 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1127 IC 240 1 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1128 IC 241 1 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1129 IC 247 1 0 0 0
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1130 # Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part.
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1131 COV [1-1] 1 1
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1132 COV [7-7] 7 1
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1133 COV [18-18] 18 1
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1134 COV [24-24] 24 1
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1135 COV [25-25] 25 249
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1136 # GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile
0d71d9467847 Uploaded
devteam
parents:
diff changeset
1137 GCD 0.0 100.000 0.000 0.000 0.000 0.000 0.000