comparison test-data/samtools_stats_out1.tab @ 12:541082d03bef draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit 9c5a35ce695c3d134e41d8695487edd5f71ea33c

11:fed4aa48ba09

# This file was produced by samtools stats (1.12+htslib-1.12) and can be plotted using plot-bamstats
# This file contains statistics for all reads.
# The command line was:  stats --ref-seq reference.fa -@ 0 infile
# CHK, Checksum	[2]Read Names	[3]Sequences	[4]Qualities
# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
CHK	1bd20fd8	58ad2167	29883386

RL	251	200
# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
FRL	251	100
# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
LRL	251	100
# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
ID	1	1	0
ID	2	1	0
ID	4	2	0
ID	10	5	0

12:541082d03bef

# This file was produced by samtools stats (1.20+htslib-1.20) and can be plotted using plot-bamstats
# This file contains statistics for all reads.
# The command line was:  stats --ref-seq reference.fa -@ 0 infile
# CHK, Checksum	[2]Read Names	[3]Sequences	[4]Qualities
# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
CHK	1bd20fd8	58ad2167	29883386

RL	251	200
# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
FRL	251	100
# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
LRL	251	100
# Mapping qualities for reads !(UNMAP|SECOND|SUPPL|QCFAIL|DUP). Use `grep ^MAPQ | cut -f 2-` to extract this part. The columns are: mapq, count
MAPQ	0	6
MAPQ	3	6
MAPQ	8	3
MAPQ	23	2
MAPQ	24	4
MAPQ	40	2
MAPQ	42	2
# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
ID	1	1	0
ID	2	1	0
ID	4	2	0
ID	10	5	0