comparison test-data/11.stats.g4.expected @ 12:541082d03bef draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit 9c5a35ce695c3d134e41d8695487edd5f71ea33c

11:fed4aa48ba09

# This file was produced by samtools stats (1.12+htslib-1.12) and can be plotted using plot-bamstats
# This file contains statistics for all reads.
# The command line was:  stats -g 4 -@ 0 infile ref1:10-24 ref1:30-46 ref1:39-56
# CHK, Checksum	[2]Read Names	[3]Sequences	[4]Qualities
# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
CHK	cb2d2d82	bcd83869	62ec814e

RL	10	26
# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
FRL	10	14
# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
LRL	10	12
# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
# Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part.
COV	[1-1]	1	1
COV	[2-2]	2	1

12:541082d03bef

# This file was produced by samtools stats (1.20+htslib-1.20) and can be plotted using plot-bamstats
# This file contains statistics for all reads.
# The command line was:  stats -g 4 -@ 0 infile ref1:10-24 ref1:30-46 ref1:39-56
# CHK, Checksum	[2]Read Names	[3]Sequences	[4]Qualities
# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
CHK	cb2d2d82	bcd83869	62ec814e

RL	10	26
# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
FRL	10	14
# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
LRL	10	12
# Mapping qualities for reads !(UNMAP|SECOND|SUPPL|QCFAIL|DUP). Use `grep ^MAPQ | cut -f 2-` to extract this part. The columns are: mapq, count
MAPQ	0	1
MAPQ	1	1
MAPQ	2	1
MAPQ	3	1
MAPQ	4	1
MAPQ	5	1
MAPQ	6	1
MAPQ	7	1
MAPQ	8	1
MAPQ	9	1
MAPQ	10	1
MAPQ	11	1
MAPQ	12	1
MAPQ	13	1
MAPQ	14	1
MAPQ	15	1
MAPQ	16	1
MAPQ	17	1
MAPQ	18	1
MAPQ	19	1
MAPQ	20	1
MAPQ	21	1
MAPQ	22	1
MAPQ	23	1
MAPQ	50	2
# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
# Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part.
COV	[1-1]	1	1
COV	[2-2]	2	1