Mercurial > repos > devteam > samtools_stats

diff samtools_stats.xml @ 9:1cc79f49b8d5 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit c5ded4208dd70e88596ddc725795a2401773f02d"
author iuc
date Sat, 27 Nov 2021 12:33:04 +0000
parents e28839a4b932
children 3a0efe14891f
line wrap: on
line diff
--- a/samtools_stats.xml	Tue Sep 28 16:17:39 2021 +0000
+++ b/samtools_stats.xml	Sat Nov 27 12:33:04 2021 +0000
@@ -42,8 +42,8 @@
                 --trim-quality ${trim_quality}
             #end if
 
-            #if $reffa != None:
-                --ref-seq '$reffa'
+            #if $use_ref:
+                --ref-seq "\$reffa"
             #end if
             ## TODO currently not implemented in Galaxy
             ## generates STR_VALUE.bamstat where STR is given by -P and VALUE is a value of the TAG given by -S