Mercurial > repos > devteam > samtools_stats
diff test-data/samtools_stats_out1.tab @ 3:95a7ddf617e7 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit 70b38ebad0d0936f102e3e7cb70f1060347ea8c4
| author | iuc |
|---|---|
| date | Thu, 27 Sep 2018 09:05:10 -0400 |
| parents | 24c5d43cb545 |
| children | e28839a4b932 |
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--- a/test-data/samtools_stats_out1.tab Tue May 09 11:19:01 2017 -0400 +++ b/test-data/samtools_stats_out1.tab Thu Sep 27 09:05:10 2018 -0400 @@ -1,6 +1,6 @@ -# This file was produced by samtools stats (1.3.1+htslib-1.3.1) and can be plotted using plot-bamstats +# This file was produced by samtools stats (1.9+htslib-1.9) and can be plotted using plot-bamstats # This file contains statistics for all reads. -# The command line was: stats --coverage 1,1000,1 --GC-depth 20000.0 --insert-size 8000 --most-inserts 0.99 --trim-quality 0 --ref-seq /tmp/tmpO1aTrb/files/000/dataset_2.dat /tmp/tmpO1aTrb/files/000/dataset_1.dat +# The command line was: stats --ref-seq reference.fa infile # CHK, Checksum [2]Read Names [3]Sequences [4]Qualities # CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow) CHK 1bd20fd8 58ad2167 29883386 @@ -21,6 +21,8 @@ SN reads QC failed: 0 SN non-primary alignments: 0 SN total length: 50200 # ignores clipping +SN total first fragment length: 25100 # ignores clipping +SN total last fragment length: 25100 # ignores clipping SN bases mapped: 6275 # ignores clipping SN bases mapped (cigar): 6275 # more accurate SN bases trimmed: 0 @@ -28,7 +30,11 @@ SN mismatches: 591 # from NM fields SN error rate: 9.418327e-02 # mismatches / bases mapped (cigar) SN average length: 251 +SN average first fragment length: 251 +SN average last fragment length: 251 SN maximum length: 251 +SN maximum first fragment length: 251 +SN maximum last fragment length: 251 SN average quality: 34.7 SN insert size average: 0.0 SN insert size standard deviation: 0.0 @@ -36,7 +42,8 @@ SN outward oriented pairs: 0 SN pairs with other orientation: 0 SN pairs on different chromosomes: 0 -# First Fragment Qualitites. Use `grep ^FFQ | cut -f 2-` to extract this part. +SN percentage of properly paired reads (%): 0.0 +# First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part. # Columns correspond to qualities and rows to cycles. First column is the cycle number. FFQ 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 3 2 0 20 38 32 1 0 0 0 0 0 0 FFQ 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 3 0 0 18 36 36 6 0 0 0 0 0 0 @@ -289,8 +296,7 @@ FFQ 249 0 0 0 0 0 0 0 0 0 0 0 0 5 6 20 8 0 0 0 0 0 0 0 0 5 7 10 0 1 0 0 0 1 15 0 2 0 20 0 0 0 0 FFQ 250 0 0 0 0 0 0 0 0 0 0 0 0 2 10 15 10 0 0 0 0 0 0 0 0 9 5 8 1 0 0 0 2 6 10 0 0 2 20 0 0 0 0 FFQ 251 0 0 0 0 0 0 0 0 0 0 0 0 7 20 21 17 0 0 0 0 0 0 0 0 7 7 6 0 0 0 0 1 2 4 0 0 0 8 0 0 0 0 -FFQ 252 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -# Last Fragment Qualitites. Use `grep ^LFQ | cut -f 2-` to extract this part. +# Last Fragment Qualities. Use `grep ^LFQ | cut -f 2-` to extract this part. # Columns correspond to qualities and rows to cycles. First column is the cycle number. LFQ 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 3 2 0 20 38 32 1 0 0 0 0 0 0 LFQ 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 3 0 0 18 36 36 6 0 0 0 0 0 0 @@ -543,7 +549,6 @@ LFQ 249 0 0 0 0 0 0 0 0 0 0 0 0 5 6 20 8 0 0 0 0 0 0 0 0 5 7 10 0 1 0 0 0 1 15 0 2 0 20 0 0 0 0 LFQ 250 0 0 0 0 0 0 0 0 0 0 0 0 2 10 15 10 0 0 0 0 0 0 0 0 9 5 8 1 0 0 0 2 6 10 0 0 2 20 0 0 0 0 LFQ 251 0 0 0 0 0 0 0 0 0 0 0 0 7 20 21 17 0 0 0 0 0 0 0 0 7 7 6 0 0 0 0 1 2 4 0 0 0 8 0 0 0 0 -LFQ 252 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # Mismatches per cycle and quality. Use `grep ^MPC | cut -f 2-` to extract this part. # Columns correspond to qualities, rows to cycles. First column is the cycle number, second # is the number of N's and the rest is the number of mismatches @@ -1089,9 +1094,517 @@ GCC 249 25.00 23.00 21.00 31.00 0.00 0.00 GCC 250 27.50 22.50 17.50 32.50 0.00 0.00 GCC 251 13.50 20.50 36.50 29.50 0.00 0.00 +# ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] +FBC 1 21.43 27.55 36.73 14.29 2.04 0.00 +FBC 2 34.00 15.00 12.00 39.00 0.00 0.00 +FBC 3 32.00 25.00 9.00 34.00 0.00 0.00 +FBC 4 21.00 26.00 16.00 37.00 0.00 0.00 +FBC 5 37.00 20.00 14.00 29.00 0.00 0.00 +FBC 6 28.00 26.00 17.00 29.00 0.00 0.00 +FBC 7 31.00 14.00 31.00 24.00 0.00 0.00 +FBC 8 52.00 13.00 21.00 14.00 0.00 0.00 +FBC 9 15.00 31.00 20.00 34.00 0.00 0.00 +FBC 10 39.00 15.00 20.00 26.00 0.00 0.00 +FBC 11 23.00 14.00 30.00 33.00 0.00 0.00 +FBC 12 32.00 24.00 22.00 22.00 0.00 0.00 +FBC 13 25.00 13.00 23.00 39.00 0.00 0.00 +FBC 14 27.27 20.20 28.28 24.24 1.01 0.00 +FBC 15 28.00 21.00 24.00 27.00 0.00 0.00 +FBC 16 27.00 15.00 20.00 38.00 0.00 0.00 +FBC 17 27.00 24.00 15.00 34.00 0.00 0.00 +FBC 18 30.00 27.00 21.00 22.00 0.00 0.00 +FBC 19 28.00 26.00 21.00 25.00 0.00 0.00 +FBC 20 22.00 26.00 15.00 37.00 0.00 0.00 +FBC 21 35.00 17.00 20.00 28.00 0.00 0.00 +FBC 22 36.00 26.00 18.00 20.00 0.00 0.00 +FBC 23 32.32 17.17 15.15 35.35 1.01 0.00 +FBC 24 38.00 10.00 24.00 28.00 0.00 0.00 +FBC 25 33.00 22.00 18.00 27.00 0.00 0.00 +FBC 26 31.00 16.00 18.00 35.00 0.00 0.00 +FBC 27 37.00 11.00 29.00 23.00 0.00 0.00 +FBC 28 32.00 15.00 23.00 30.00 0.00 0.00 +FBC 29 30.00 26.00 25.00 19.00 0.00 0.00 +FBC 30 28.00 19.00 15.00 38.00 0.00 0.00 +FBC 31 34.00 30.00 13.00 23.00 0.00 0.00 +FBC 32 47.00 21.00 19.00 13.00 0.00 0.00 +FBC 33 24.00 24.00 14.00 38.00 0.00 0.00 +FBC 34 36.00 16.00 21.00 27.00 0.00 0.00 +FBC 35 30.00 24.00 21.00 25.00 0.00 0.00 +FBC 36 43.00 25.00 16.00 16.00 0.00 0.00 +FBC 37 38.00 16.00 20.00 26.00 0.00 0.00 +FBC 38 25.00 26.00 25.00 24.00 0.00 0.00 +FBC 39 23.00 42.00 18.00 17.00 0.00 0.00 +FBC 40 35.00 18.00 19.00 28.00 0.00 0.00 +FBC 41 37.00 29.00 18.00 16.00 0.00 0.00 +FBC 42 32.00 24.00 21.00 23.00 0.00 0.00 +FBC 43 32.00 30.00 14.00 24.00 0.00 0.00 +FBC 44 19.00 28.00 21.00 32.00 0.00 0.00 +FBC 45 43.00 18.00 25.00 14.00 0.00 0.00 +FBC 46 26.00 20.00 23.00 31.00 0.00 0.00 +FBC 47 37.00 31.00 15.00 17.00 0.00 0.00 +FBC 48 30.00 27.00 15.00 28.00 0.00 0.00 +FBC 49 31.00 32.00 11.00 26.00 0.00 0.00 +FBC 50 44.00 21.00 9.00 26.00 0.00 0.00 +FBC 51 40.00 28.00 14.00 18.00 0.00 0.00 +FBC 52 40.00 25.00 19.00 16.00 0.00 0.00 +FBC 53 21.00 29.00 25.00 25.00 0.00 0.00 +FBC 54 38.00 19.00 24.00 19.00 0.00 0.00 +FBC 55 29.00 23.00 16.00 32.00 0.00 0.00 +FBC 56 31.00 25.00 11.00 33.00 0.00 0.00 +FBC 57 18.00 24.00 23.00 35.00 0.00 0.00 +FBC 58 27.00 35.00 21.00 17.00 0.00 0.00 +FBC 59 35.00 25.00 22.00 18.00 0.00 0.00 +FBC 60 28.00 30.00 15.00 27.00 0.00 0.00 +FBC 61 28.00 24.00 24.00 24.00 0.00 0.00 +FBC 62 28.00 26.00 13.00 33.00 0.00 0.00 +FBC 63 29.00 32.00 22.00 17.00 0.00 0.00 +FBC 64 37.00 23.00 24.00 16.00 0.00 0.00 +FBC 65 33.00 22.00 16.00 29.00 0.00 0.00 +FBC 66 35.00 24.00 16.00 25.00 0.00 0.00 +FBC 67 39.00 25.00 17.00 19.00 0.00 0.00 +FBC 68 34.00 31.00 12.00 23.00 0.00 0.00 +FBC 69 39.00 21.00 19.00 21.00 0.00 0.00 +FBC 70 37.00 20.00 15.00 28.00 0.00 0.00 +FBC 71 22.00 36.00 24.00 18.00 0.00 0.00 +FBC 72 25.00 32.00 22.00 21.00 0.00 0.00 +FBC 73 34.00 23.00 19.00 24.00 0.00 0.00 +FBC 74 26.00 33.00 12.00 29.00 0.00 0.00 +FBC 75 37.00 15.00 16.00 32.00 0.00 0.00 +FBC 76 26.00 31.00 22.00 21.00 0.00 0.00 +FBC 77 37.00 22.00 17.00 24.00 0.00 0.00 +FBC 78 25.00 38.00 18.00 19.00 0.00 0.00 +FBC 79 19.00 28.00 24.00 29.00 0.00 0.00 +FBC 80 28.00 20.00 27.00 25.00 0.00 0.00 +FBC 81 16.00 26.00 26.00 32.00 0.00 0.00 +FBC 82 32.00 35.00 18.00 15.00 0.00 0.00 +FBC 83 27.00 28.00 11.00 34.00 0.00 0.00 +FBC 84 16.00 43.00 19.00 22.00 0.00 0.00 +FBC 85 33.00 29.00 12.00 26.00 0.00 0.00 +FBC 86 18.00 49.00 14.00 19.00 0.00 0.00 +FBC 87 37.00 17.00 17.00 29.00 0.00 0.00 +FBC 88 21.00 31.00 24.00 24.00 0.00 0.00 +FBC 89 27.00 30.00 24.00 19.00 0.00 0.00 +FBC 90 13.00 25.00 23.00 39.00 0.00 0.00 +FBC 91 25.00 34.00 20.00 21.00 0.00 0.00 +FBC 92 25.00 22.00 23.00 30.00 0.00 0.00 +FBC 93 22.00 35.00 18.00 25.00 0.00 0.00 +FBC 94 24.00 18.00 23.00 35.00 0.00 0.00 +FBC 95 22.22 40.40 12.12 25.25 1.01 0.00 +FBC 96 25.00 24.00 18.00 33.00 0.00 0.00 +FBC 97 26.00 35.00 17.00 22.00 0.00 0.00 +FBC 98 15.15 35.35 20.20 29.29 1.01 0.00 +FBC 99 22.00 30.00 28.00 20.00 0.00 0.00 +FBC 100 20.00 18.00 23.00 39.00 0.00 0.00 +FBC 101 23.00 46.00 13.00 18.00 0.00 0.00 +FBC 102 15.00 21.00 29.00 35.00 0.00 0.00 +FBC 103 30.00 26.00 16.00 28.00 0.00 0.00 +FBC 104 23.00 31.00 19.00 27.00 0.00 0.00 +FBC 105 33.00 31.00 23.00 13.00 0.00 0.00 +FBC 106 24.00 30.00 27.00 19.00 0.00 0.00 +FBC 107 16.16 38.38 21.21 24.24 1.01 0.00 +FBC 108 22.22 28.28 26.26 23.23 1.01 0.00 +FBC 109 15.00 33.00 20.00 32.00 0.00 0.00 +FBC 110 12.12 39.39 20.20 28.28 1.01 0.00 +FBC 111 23.23 31.31 24.24 21.21 1.01 0.00 +FBC 112 35.35 28.28 16.16 20.20 1.01 0.00 +FBC 113 18.18 21.21 34.34 26.26 1.01 0.00 +FBC 114 15.00 31.00 35.00 19.00 0.00 0.00 +FBC 115 27.00 26.00 22.00 25.00 0.00 0.00 +FBC 116 24.00 31.00 33.00 12.00 0.00 0.00 +FBC 117 23.00 25.00 17.00 35.00 0.00 0.00 +FBC 118 26.00 15.00 34.00 25.00 0.00 0.00 +FBC 119 24.00 38.00 17.00 21.00 0.00 0.00 +FBC 120 16.00 25.00 26.00 33.00 0.00 0.00 +FBC 121 31.31 31.31 25.25 12.12 1.01 0.00 +FBC 122 16.00 21.00 27.00 36.00 0.00 0.00 +FBC 123 22.00 45.00 13.00 20.00 0.00 0.00 +FBC 124 8.00 33.00 33.00 26.00 0.00 0.00 +FBC 125 21.00 30.00 16.00 33.00 0.00 0.00 +FBC 126 28.00 15.00 30.00 27.00 0.00 0.00 +FBC 127 27.00 17.00 21.00 35.00 0.00 0.00 +FBC 128 20.00 33.00 32.00 15.00 0.00 0.00 +FBC 129 27.00 24.00 29.00 20.00 0.00 0.00 +FBC 130 25.00 21.00 21.00 33.00 0.00 0.00 +FBC 131 18.00 39.00 25.00 18.00 0.00 0.00 +FBC 132 22.00 29.00 22.00 27.00 0.00 0.00 +FBC 133 12.00 29.00 38.00 21.00 0.00 0.00 +FBC 134 27.00 20.00 30.00 23.00 0.00 0.00 +FBC 135 16.00 19.00 35.00 30.00 0.00 0.00 +FBC 136 31.00 31.00 16.00 22.00 0.00 0.00 +FBC 137 24.00 21.00 31.00 24.00 0.00 0.00 +FBC 138 14.00 39.00 20.00 27.00 0.00 0.00 +FBC 139 22.00 27.00 27.00 24.00 0.00 0.00 +FBC 140 15.00 22.00 31.00 32.00 0.00 0.00 +FBC 141 20.00 23.00 26.00 31.00 0.00 0.00 +FBC 142 19.00 26.00 41.00 14.00 0.00 0.00 +FBC 143 21.00 25.00 26.00 28.00 0.00 0.00 +FBC 144 23.00 28.00 29.00 20.00 0.00 0.00 +FBC 145 24.00 16.00 34.00 26.00 0.00 0.00 +FBC 146 24.00 17.00 38.00 21.00 0.00 0.00 +FBC 147 30.00 22.00 31.00 17.00 0.00 0.00 +FBC 148 13.00 25.00 40.00 22.00 0.00 0.00 +FBC 149 26.00 23.00 24.00 27.00 0.00 0.00 +FBC 150 16.00 26.00 27.00 31.00 0.00 0.00 +FBC 151 17.00 32.00 31.00 20.00 0.00 0.00 +FBC 152 21.00 14.00 33.00 32.00 0.00 0.00 +FBC 153 21.00 25.00 29.00 25.00 0.00 0.00 +FBC 154 19.00 20.00 30.00 31.00 0.00 0.00 +FBC 155 21.00 24.00 21.00 34.00 0.00 0.00 +FBC 156 13.00 24.00 35.00 28.00 0.00 0.00 +FBC 157 21.00 28.00 26.00 25.00 0.00 0.00 +FBC 158 24.00 26.00 28.00 22.00 0.00 0.00 +FBC 159 16.00 10.00 49.00 25.00 0.00 0.00 +FBC 160 25.00 22.00 31.00 22.00 0.00 0.00 +FBC 161 13.00 18.00 50.00 19.00 0.00 0.00 +FBC 162 30.00 14.00 25.00 31.00 0.00 0.00 +FBC 163 16.00 17.00 40.00 27.00 0.00 0.00 +FBC 164 25.00 17.00 22.00 36.00 0.00 0.00 +FBC 165 16.00 19.00 34.00 31.00 0.00 0.00 +FBC 166 15.00 39.00 27.00 19.00 0.00 0.00 +FBC 167 16.00 15.00 38.00 31.00 0.00 0.00 +FBC 168 12.00 26.00 29.00 33.00 0.00 0.00 +FBC 169 16.00 18.00 26.00 40.00 0.00 0.00 +FBC 170 16.00 22.00 29.00 33.00 0.00 0.00 +FBC 171 17.00 26.00 35.00 22.00 0.00 0.00 +FBC 172 14.00 18.00 34.00 34.00 0.00 0.00 +FBC 173 25.00 16.00 34.00 25.00 0.00 0.00 +FBC 174 14.00 23.00 34.00 29.00 0.00 0.00 +FBC 175 33.00 16.00 37.00 14.00 0.00 0.00 +FBC 176 16.00 28.00 33.00 23.00 0.00 0.00 +FBC 177 14.00 20.00 29.00 37.00 0.00 0.00 +FBC 178 13.00 26.00 30.00 31.00 0.00 0.00 +FBC 179 12.00 16.00 24.00 48.00 0.00 0.00 +FBC 180 20.00 19.00 37.00 24.00 0.00 0.00 +FBC 181 20.00 22.00 33.00 25.00 0.00 0.00 +FBC 182 30.00 16.00 25.00 29.00 0.00 0.00 +FBC 183 21.00 12.00 30.00 37.00 0.00 0.00 +FBC 184 13.00 28.00 31.00 28.00 0.00 0.00 +FBC 185 14.00 32.00 33.00 21.00 0.00 0.00 +FBC 186 24.00 25.00 33.00 18.00 0.00 0.00 +FBC 187 14.00 15.00 39.00 32.00 0.00 0.00 +FBC 188 26.00 24.00 25.00 25.00 0.00 0.00 +FBC 189 15.00 21.00 35.00 29.00 0.00 0.00 +FBC 190 22.00 32.00 21.00 25.00 0.00 0.00 +FBC 191 22.00 23.00 27.00 28.00 0.00 0.00 +FBC 192 32.00 24.00 14.00 30.00 0.00 0.00 +FBC 193 19.00 25.00 26.00 30.00 0.00 0.00 +FBC 194 16.00 33.00 25.00 26.00 0.00 0.00 +FBC 195 16.00 24.00 25.00 35.00 0.00 0.00 +FBC 196 20.00 28.00 22.00 30.00 0.00 0.00 +FBC 197 22.00 22.00 22.00 34.00 0.00 0.00 +FBC 198 19.00 23.00 35.00 23.00 0.00 0.00 +FBC 199 18.00 20.00 24.00 38.00 0.00 0.00 +FBC 200 17.00 31.00 19.00 33.00 0.00 0.00 +FBC 201 28.00 23.00 21.00 28.00 0.00 0.00 +FBC 202 20.00 26.00 18.00 36.00 0.00 0.00 +FBC 203 22.00 30.00 21.00 27.00 0.00 0.00 +FBC 204 28.00 29.00 24.00 19.00 0.00 0.00 +FBC 205 23.00 20.00 24.00 33.00 0.00 0.00 +FBC 206 25.00 24.00 22.00 29.00 0.00 0.00 +FBC 207 23.00 21.00 20.00 36.00 0.00 0.00 +FBC 208 16.00 38.00 26.00 20.00 0.00 0.00 +FBC 209 14.00 26.00 9.00 51.00 0.00 0.00 +FBC 210 19.00 24.00 36.00 21.00 0.00 0.00 +FBC 211 24.00 26.00 16.00 34.00 0.00 0.00 +FBC 212 19.00 35.00 14.00 32.00 0.00 0.00 +FBC 213 26.00 18.00 28.00 28.00 0.00 0.00 +FBC 214 19.00 25.00 25.00 31.00 0.00 0.00 +FBC 215 24.00 26.00 21.00 29.00 0.00 0.00 +FBC 216 25.00 18.00 25.00 32.00 0.00 0.00 +FBC 217 25.00 28.00 18.00 29.00 0.00 0.00 +FBC 218 22.00 30.00 18.00 30.00 0.00 0.00 +FBC 219 15.00 24.00 18.00 43.00 0.00 0.00 +FBC 220 23.00 24.00 23.00 30.00 0.00 0.00 +FBC 221 23.00 23.00 21.00 33.00 0.00 0.00 +FBC 222 21.00 22.00 18.00 39.00 0.00 0.00 +FBC 223 21.00 32.00 23.00 24.00 0.00 0.00 +FBC 224 26.00 25.00 22.00 27.00 0.00 0.00 +FBC 225 15.00 39.00 27.00 19.00 0.00 0.00 +FBC 226 20.00 26.00 23.00 31.00 0.00 0.00 +FBC 227 24.00 27.00 21.00 28.00 0.00 0.00 +FBC 228 32.00 18.00 27.00 23.00 0.00 0.00 +FBC 229 23.00 22.00 21.00 34.00 0.00 0.00 +FBC 230 19.00 31.00 17.00 33.00 0.00 0.00 +FBC 231 26.00 29.00 29.00 16.00 0.00 0.00 +FBC 232 22.00 20.00 14.00 44.00 0.00 0.00 +FBC 233 20.00 29.00 23.00 28.00 0.00 0.00 +FBC 234 19.00 28.00 22.00 31.00 0.00 0.00 +FBC 235 23.00 19.00 24.00 34.00 0.00 0.00 +FBC 236 27.00 26.00 18.00 29.00 0.00 0.00 +FBC 237 25.00 20.00 22.00 33.00 0.00 0.00 +FBC 238 21.00 34.00 20.00 25.00 0.00 0.00 +FBC 239 22.00 8.00 17.00 53.00 0.00 0.00 +FBC 240 29.00 22.00 18.00 31.00 0.00 0.00 +FBC 241 24.00 23.00 16.00 37.00 0.00 0.00 +FBC 242 32.00 22.00 16.00 30.00 0.00 0.00 +FBC 243 20.00 16.00 23.00 41.00 0.00 0.00 +FBC 244 26.00 23.00 17.00 34.00 0.00 0.00 +FBC 245 32.00 23.00 19.00 26.00 0.00 0.00 +FBC 246 24.00 33.00 21.00 22.00 0.00 0.00 +FBC 247 34.00 15.00 12.00 39.00 0.00 0.00 +FBC 248 14.00 19.00 24.00 43.00 0.00 0.00 +FBC 249 25.00 24.00 20.00 31.00 0.00 0.00 +FBC 250 30.00 25.00 15.00 30.00 0.00 0.00 +FBC 251 14.00 24.00 33.00 29.00 0.00 0.00 +# ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] +LBC 1 22.45 32.65 31.63 13.27 2.04 0.00 +LBC 2 26.00 17.00 10.00 47.00 0.00 0.00 +LBC 3 34.00 25.00 9.00 32.00 0.00 0.00 +LBC 4 13.00 32.00 10.00 45.00 0.00 0.00 +LBC 5 37.00 24.00 10.00 29.00 0.00 0.00 +LBC 6 44.00 26.00 17.00 13.00 0.00 0.00 +LBC 7 28.00 13.00 32.00 27.00 0.00 0.00 +LBC 8 49.00 16.00 18.00 17.00 0.00 0.00 +LBC 9 19.00 35.00 16.00 30.00 0.00 0.00 +LBC 10 35.00 13.00 22.00 30.00 0.00 0.00 +LBC 11 18.00 15.00 29.00 38.00 0.00 0.00 +LBC 12 28.00 24.00 22.00 26.00 0.00 0.00 +LBC 13 29.00 17.00 19.00 35.00 0.00 0.00 +LBC 14 21.21 24.24 24.24 30.30 1.01 0.00 +LBC 15 23.00 20.00 25.00 32.00 0.00 0.00 +LBC 16 35.00 15.00 20.00 30.00 0.00 0.00 +LBC 17 29.00 26.00 13.00 32.00 0.00 0.00 +LBC 18 31.00 30.00 18.00 21.00 0.00 0.00 +LBC 19 30.00 26.00 21.00 23.00 0.00 0.00 +LBC 20 23.00 21.00 20.00 36.00 0.00 0.00 +LBC 21 36.00 18.00 19.00 27.00 0.00 0.00 +LBC 22 39.00 31.00 13.00 17.00 0.00 0.00 +LBC 23 30.30 21.21 11.11 37.37 1.01 0.00 +LBC 24 36.00 14.00 20.00 30.00 0.00 0.00 +LBC 25 38.00 23.00 17.00 22.00 0.00 0.00 +LBC 26 36.00 21.00 13.00 30.00 0.00 0.00 +LBC 27 32.00 18.00 22.00 28.00 0.00 0.00 +LBC 28 30.00 13.00 25.00 32.00 0.00 0.00 +LBC 29 30.00 28.00 23.00 19.00 0.00 0.00 +LBC 30 34.00 21.00 13.00 32.00 0.00 0.00 +LBC 31 33.00 29.00 14.00 24.00 0.00 0.00 +LBC 32 38.00 20.00 20.00 22.00 0.00 0.00 +LBC 33 27.00 23.00 15.00 35.00 0.00 0.00 +LBC 34 43.00 17.00 20.00 20.00 0.00 0.00 +LBC 35 35.00 23.00 22.00 20.00 0.00 0.00 +LBC 36 41.00 25.00 16.00 18.00 0.00 0.00 +LBC 37 38.00 18.00 18.00 26.00 0.00 0.00 +LBC 38 23.00 26.00 25.00 26.00 0.00 0.00 +LBC 39 22.00 41.00 19.00 18.00 0.00 0.00 +LBC 40 29.00 14.00 23.00 34.00 0.00 0.00 +LBC 41 29.00 27.00 20.00 24.00 0.00 0.00 +LBC 42 29.00 27.00 18.00 26.00 0.00 0.00 +LBC 43 38.00 28.00 16.00 18.00 0.00 0.00 +LBC 44 21.00 26.00 23.00 30.00 0.00 0.00 +LBC 45 38.00 25.00 18.00 19.00 0.00 0.00 +LBC 46 27.00 21.00 22.00 30.00 0.00 0.00 +LBC 47 40.00 28.00 18.00 14.00 0.00 0.00 +LBC 48 25.00 22.00 20.00 33.00 0.00 0.00 +LBC 49 26.00 33.00 10.00 31.00 0.00 0.00 +LBC 50 49.00 20.00 10.00 21.00 0.00 0.00 +LBC 51 29.00 29.00 13.00 29.00 0.00 0.00 +LBC 52 43.00 22.00 22.00 13.00 0.00 0.00 +LBC 53 19.00 27.00 27.00 27.00 0.00 0.00 +LBC 54 25.00 18.00 25.00 32.00 0.00 0.00 +LBC 55 32.00 22.00 17.00 29.00 0.00 0.00 +LBC 56 36.00 20.00 16.00 28.00 0.00 0.00 +LBC 57 28.00 24.00 23.00 25.00 0.00 0.00 +LBC 58 23.00 39.00 17.00 21.00 0.00 0.00 +LBC 59 33.00 21.00 26.00 20.00 0.00 0.00 +LBC 60 30.00 26.00 19.00 25.00 0.00 0.00 +LBC 61 23.00 23.00 25.00 29.00 0.00 0.00 +LBC 62 35.00 19.00 20.00 26.00 0.00 0.00 +LBC 63 26.00 25.00 29.00 20.00 0.00 0.00 +LBC 64 30.00 20.00 27.00 23.00 0.00 0.00 +LBC 65 38.00 17.00 21.00 24.00 0.00 0.00 +LBC 66 33.00 26.00 14.00 27.00 0.00 0.00 +LBC 67 35.00 21.00 21.00 23.00 0.00 0.00 +LBC 68 39.00 28.00 15.00 18.00 0.00 0.00 +LBC 69 38.00 18.00 22.00 22.00 0.00 0.00 +LBC 70 40.00 13.00 22.00 25.00 0.00 0.00 +LBC 71 29.00 41.00 19.00 11.00 0.00 0.00 +LBC 72 33.00 26.00 28.00 13.00 0.00 0.00 +LBC 73 31.00 18.00 24.00 27.00 0.00 0.00 +LBC 74 31.00 32.00 13.00 24.00 0.00 0.00 +LBC 75 46.00 10.00 21.00 23.00 0.00 0.00 +LBC 76 23.00 28.00 25.00 24.00 0.00 0.00 +LBC 77 35.00 20.00 19.00 26.00 0.00 0.00 +LBC 78 29.00 30.00 26.00 15.00 0.00 0.00 +LBC 79 24.00 25.00 27.00 24.00 0.00 0.00 +LBC 80 40.00 18.00 29.00 13.00 0.00 0.00 +LBC 81 18.00 26.00 26.00 30.00 0.00 0.00 +LBC 82 30.00 25.00 28.00 17.00 0.00 0.00 +LBC 83 36.00 25.00 14.00 25.00 0.00 0.00 +LBC 84 22.00 39.00 23.00 16.00 0.00 0.00 +LBC 85 42.00 20.00 21.00 17.00 0.00 0.00 +LBC 86 12.00 47.00 16.00 25.00 0.00 0.00 +LBC 87 45.00 15.00 19.00 21.00 0.00 0.00 +LBC 88 26.00 24.00 31.00 19.00 0.00 0.00 +LBC 89 26.00 25.00 29.00 20.00 0.00 0.00 +LBC 90 24.00 22.00 26.00 28.00 0.00 0.00 +LBC 91 29.00 30.00 24.00 17.00 0.00 0.00 +LBC 92 22.00 13.00 32.00 33.00 0.00 0.00 +LBC 93 29.00 40.00 13.00 18.00 0.00 0.00 +LBC 94 30.00 16.00 25.00 29.00 0.00 0.00 +LBC 95 31.31 35.35 17.17 16.16 1.01 0.00 +LBC 96 34.00 27.00 15.00 24.00 0.00 0.00 +LBC 97 32.00 27.00 25.00 16.00 0.00 0.00 +LBC 98 21.21 31.31 24.24 23.23 1.01 0.00 +LBC 99 27.00 37.00 21.00 15.00 0.00 0.00 +LBC 100 29.00 15.00 26.00 30.00 0.00 0.00 +LBC 101 27.00 34.00 25.00 14.00 0.00 0.00 +LBC 102 20.00 14.00 36.00 30.00 0.00 0.00 +LBC 103 32.00 26.00 16.00 26.00 0.00 0.00 +LBC 104 30.00 28.00 22.00 20.00 0.00 0.00 +LBC 105 35.00 35.00 19.00 11.00 0.00 0.00 +LBC 106 22.00 32.00 25.00 21.00 0.00 0.00 +LBC 107 19.19 33.33 26.26 21.21 1.01 0.00 +LBC 108 27.27 33.33 21.21 18.18 1.01 0.00 +LBC 109 19.00 29.00 24.00 28.00 0.00 0.00 +LBC 110 20.20 31.31 28.28 20.20 1.01 0.00 +LBC 111 25.25 33.33 22.22 19.19 1.01 0.00 +LBC 112 39.39 28.28 16.16 16.16 1.01 0.00 +LBC 113 21.21 24.24 31.31 23.23 1.01 0.00 +LBC 114 19.00 31.00 35.00 15.00 0.00 0.00 +LBC 115 32.00 23.00 25.00 20.00 0.00 0.00 +LBC 116 20.00 29.00 35.00 16.00 0.00 0.00 +LBC 117 31.00 21.00 21.00 27.00 0.00 0.00 +LBC 118 25.00 14.00 35.00 26.00 0.00 0.00 +LBC 119 21.00 31.00 24.00 24.00 0.00 0.00 +LBC 120 19.00 24.00 27.00 30.00 0.00 0.00 +LBC 121 24.24 36.36 20.20 19.19 1.01 0.00 +LBC 122 18.00 25.00 23.00 34.00 0.00 0.00 +LBC 123 25.00 48.00 10.00 17.00 0.00 0.00 +LBC 124 10.00 31.00 35.00 24.00 0.00 0.00 +LBC 125 27.00 24.00 22.00 27.00 0.00 0.00 +LBC 126 24.00 19.00 26.00 31.00 0.00 0.00 +LBC 127 26.00 16.00 22.00 36.00 0.00 0.00 +LBC 128 16.00 35.00 30.00 19.00 0.00 0.00 +LBC 129 24.00 27.00 26.00 23.00 0.00 0.00 +LBC 130 25.00 19.00 23.00 33.00 0.00 0.00 +LBC 131 17.00 40.00 24.00 19.00 0.00 0.00 +LBC 132 20.00 27.00 24.00 29.00 0.00 0.00 +LBC 133 15.00 34.00 33.00 18.00 0.00 0.00 +LBC 134 22.00 19.00 31.00 28.00 0.00 0.00 +LBC 135 17.00 28.00 26.00 29.00 0.00 0.00 +LBC 136 25.00 33.00 14.00 28.00 0.00 0.00 +LBC 137 21.00 22.00 30.00 27.00 0.00 0.00 +LBC 138 15.00 30.00 29.00 26.00 0.00 0.00 +LBC 139 19.00 32.00 22.00 27.00 0.00 0.00 +LBC 140 19.00 24.00 29.00 28.00 0.00 0.00 +LBC 141 21.00 24.00 25.00 30.00 0.00 0.00 +LBC 142 17.00 32.00 35.00 16.00 0.00 0.00 +LBC 143 23.00 23.00 28.00 26.00 0.00 0.00 +LBC 144 20.00 33.00 24.00 23.00 0.00 0.00 +LBC 145 20.00 26.00 24.00 30.00 0.00 0.00 +LBC 146 26.00 15.00 40.00 19.00 0.00 0.00 +LBC 147 23.00 23.00 30.00 24.00 0.00 0.00 +LBC 148 12.00 32.00 33.00 23.00 0.00 0.00 +LBC 149 27.00 24.00 23.00 26.00 0.00 0.00 +LBC 150 12.00 32.00 21.00 35.00 0.00 0.00 +LBC 151 22.00 29.00 34.00 15.00 0.00 0.00 +LBC 152 16.00 21.00 26.00 37.00 0.00 0.00 +LBC 153 24.00 20.00 34.00 22.00 0.00 0.00 +LBC 154 25.00 22.00 28.00 25.00 0.00 0.00 +LBC 155 21.00 28.00 17.00 34.00 0.00 0.00 +LBC 156 16.00 23.00 36.00 25.00 0.00 0.00 +LBC 157 23.00 34.00 20.00 23.00 0.00 0.00 +LBC 158 21.00 33.00 21.00 25.00 0.00 0.00 +LBC 159 19.00 15.00 44.00 22.00 0.00 0.00 +LBC 160 24.00 31.00 22.00 23.00 0.00 0.00 +LBC 161 13.00 28.00 40.00 19.00 0.00 0.00 +LBC 162 33.00 19.00 20.00 28.00 0.00 0.00 +LBC 163 23.00 26.00 31.00 20.00 0.00 0.00 +LBC 164 33.00 19.00 20.00 28.00 0.00 0.00 +LBC 165 13.00 16.00 37.00 34.00 0.00 0.00 +LBC 166 20.00 36.00 30.00 14.00 0.00 0.00 +LBC 167 17.00 28.00 25.00 30.00 0.00 0.00 +LBC 168 16.00 24.00 31.00 29.00 0.00 0.00 +LBC 169 21.00 23.00 21.00 35.00 0.00 0.00 +LBC 170 22.00 24.00 27.00 27.00 0.00 0.00 +LBC 171 23.00 30.00 31.00 16.00 0.00 0.00 +LBC 172 24.00 22.00 30.00 24.00 0.00 0.00 +LBC 173 24.00 17.00 33.00 26.00 0.00 0.00 +LBC 174 21.00 24.00 33.00 22.00 0.00 0.00 +LBC 175 34.00 19.00 34.00 13.00 0.00 0.00 +LBC 176 17.00 37.00 24.00 22.00 0.00 0.00 +LBC 177 24.00 24.00 25.00 27.00 0.00 0.00 +LBC 178 19.00 26.00 30.00 25.00 0.00 0.00 +LBC 179 24.00 20.00 20.00 36.00 0.00 0.00 +LBC 180 22.00 25.00 31.00 22.00 0.00 0.00 +LBC 181 21.00 17.00 38.00 24.00 0.00 0.00 +LBC 182 35.00 21.00 20.00 24.00 0.00 0.00 +LBC 183 28.00 15.00 27.00 30.00 0.00 0.00 +LBC 184 17.00 30.00 29.00 24.00 0.00 0.00 +LBC 185 16.00 32.00 33.00 19.00 0.00 0.00 +LBC 186 21.00 22.00 36.00 21.00 0.00 0.00 +LBC 187 24.00 13.00 41.00 22.00 0.00 0.00 +LBC 188 29.00 19.00 30.00 22.00 0.00 0.00 +LBC 189 19.00 23.00 33.00 25.00 0.00 0.00 +LBC 190 24.00 28.00 25.00 23.00 0.00 0.00 +LBC 191 28.00 21.00 29.00 22.00 0.00 0.00 +LBC 192 37.00 25.00 13.00 25.00 0.00 0.00 +LBC 193 18.00 26.00 25.00 31.00 0.00 0.00 +LBC 194 21.00 34.00 24.00 21.00 0.00 0.00 +LBC 195 16.00 28.00 21.00 35.00 0.00 0.00 +LBC 196 23.00 23.00 27.00 27.00 0.00 0.00 +LBC 197 18.00 20.00 24.00 38.00 0.00 0.00 +LBC 198 15.00 19.00 39.00 27.00 0.00 0.00 +LBC 199 23.00 17.00 27.00 33.00 0.00 0.00 +LBC 200 25.00 27.00 23.00 25.00 0.00 0.00 +LBC 201 26.00 19.00 25.00 30.00 0.00 0.00 +LBC 202 23.00 23.00 21.00 33.00 0.00 0.00 +LBC 203 21.00 19.00 32.00 28.00 0.00 0.00 +LBC 204 26.00 29.00 24.00 21.00 0.00 0.00 +LBC 205 16.00 23.00 21.00 40.00 0.00 0.00 +LBC 206 28.00 25.00 21.00 26.00 0.00 0.00 +LBC 207 22.00 22.00 19.00 37.00 0.00 0.00 +LBC 208 12.00 32.00 32.00 24.00 0.00 0.00 +LBC 209 18.00 20.00 15.00 47.00 0.00 0.00 +LBC 210 18.00 15.00 45.00 22.00 0.00 0.00 +LBC 211 28.00 14.00 28.00 30.00 0.00 0.00 +LBC 212 23.00 27.00 22.00 28.00 0.00 0.00 +LBC 213 22.00 12.00 34.00 32.00 0.00 0.00 +LBC 214 16.00 24.00 26.00 34.00 0.00 0.00 +LBC 215 28.00 22.00 25.00 25.00 0.00 0.00 +LBC 216 18.00 17.00 26.00 39.00 0.00 0.00 +LBC 217 27.00 30.00 16.00 27.00 0.00 0.00 +LBC 218 18.00 24.00 24.00 34.00 0.00 0.00 +LBC 219 19.00 18.00 24.00 39.00 0.00 0.00 +LBC 220 28.00 23.00 24.00 25.00 0.00 0.00 +LBC 221 20.00 24.00 20.00 36.00 0.00 0.00 +LBC 222 22.00 21.00 19.00 38.00 0.00 0.00 +LBC 223 19.00 22.00 33.00 26.00 0.00 0.00 +LBC 224 19.00 20.00 27.00 34.00 0.00 0.00 +LBC 225 14.00 32.00 34.00 20.00 0.00 0.00 +LBC 226 20.00 20.00 29.00 31.00 0.00 0.00 +LBC 227 17.00 22.00 26.00 35.00 0.00 0.00 +LBC 228 34.00 20.00 25.00 21.00 0.00 0.00 +LBC 229 22.00 27.00 16.00 35.00 0.00 0.00 +LBC 230 23.00 33.00 15.00 29.00 0.00 0.00 +LBC 231 20.00 27.00 31.00 22.00 0.00 0.00 +LBC 232 25.00 23.00 11.00 41.00 0.00 0.00 +LBC 233 22.00 25.00 27.00 26.00 0.00 0.00 +LBC 234 14.00 27.00 23.00 36.00 0.00 0.00 +LBC 235 17.00 11.00 32.00 40.00 0.00 0.00 +LBC 236 29.00 20.00 24.00 27.00 0.00 0.00 +LBC 237 16.00 19.00 23.00 42.00 0.00 0.00 +LBC 238 22.00 25.00 29.00 24.00 0.00 0.00 +LBC 239 18.00 8.00 17.00 57.00 0.00 0.00 +LBC 240 27.00 26.00 14.00 33.00 0.00 0.00 +LBC 241 21.00 22.00 17.00 40.00 0.00 0.00 +LBC 242 26.00 28.00 10.00 36.00 0.00 0.00 +LBC 243 25.00 15.00 24.00 36.00 0.00 0.00 +LBC 244 15.00 24.00 16.00 45.00 0.00 0.00 +LBC 245 24.00 23.00 19.00 34.00 0.00 0.00 +LBC 246 18.00 25.00 29.00 28.00 0.00 0.00 +LBC 247 30.00 13.00 14.00 43.00 0.00 0.00 +LBC 248 22.00 17.00 26.00 35.00 0.00 0.00 +LBC 249 25.00 22.00 22.00 31.00 0.00 0.00 +LBC 250 25.00 20.00 20.00 35.00 0.00 0.00 +LBC 251 13.00 17.00 40.00 30.00 0.00 0.00 # Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs # Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count RL 251 200 +# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count +FRL 251 100 +# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count +LRL 251 100 # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions ID 1 1 0 ID 2 1 0 @@ -1129,10 +1642,22 @@ IC 241 1 0 0 0 IC 247 1 0 0 0 # Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part. -COV [1-1] 1 1 -COV [7-7] 7 1 +COV [2-2] 2 1 +COV [3-3] 3 3 +COV [4-4] 4 1 +COV [5-5] 5 5 +COV [9-9] 9 3 +COV [10-10] 10 2 +COV [11-11] 11 3 +COV [12-12] 12 2 +COV [13-13] 13 1 +COV [14-14] 14 1 +COV [15-15] 15 1 COV [18-18] 18 1 +COV [20-20] 20 6 +COV [21-21] 21 6 +COV [23-23] 23 3 COV [24-24] 24 1 -COV [25-25] 25 249 +COV [25-25] 25 211 # GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile GCD 0.0 100.000 0.000 0.000 0.000 0.000 0.000