Mercurial > repos > devteam > samtools_stats
view test-data/12.2reads.overlap.expected @ 10:3a0efe14891f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit 84db51c96845854eb42c1a9949e4b79316b41925
| author | iuc |
|---|---|
| date | Wed, 22 Jun 2022 07:48:55 +0000 |
| parents | e28839a4b932 |
| children | 541082d03bef |
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# This file was produced by samtools stats (1.12+htslib-1.12) and can be plotted using plot-bamstats # This file contains statistics for all reads. # The command line was: stats -t /tmp/tmp0r5zs075/files/2/a/2/dataset_2a2a3ee9-3133-4880-a37c-50b6354c9000.dat -@ 0 infile # CHK, Checksum [2]Read Names [3]Sequences [4]Qualities # CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow) CHK 5b31676a b0edee94 471895da # Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part. SN raw total sequences: 2 # excluding supplementary and secondary reads SN filtered sequences: 0 SN sequences: 2 SN is sorted: 1 SN 1st fragments: 1 SN last fragments: 1 SN reads mapped: 2 SN reads mapped and paired: 2 # paired-end technology bit set + both mates mapped SN reads unmapped: 0 SN reads properly paired: 2 # proper-pair bit set SN reads paired: 2 # paired-end technology bit set SN reads duplicated: 0 # PCR or optical duplicate bit set SN reads MQ0: 0 # mapped and MQ=0 SN reads QC failed: 0 SN non-primary alignments: 0 SN supplementary alignments: 0 SN total length: 200 # ignores clipping SN total first fragment length: 100 # ignores clipping SN total last fragment length: 100 # ignores clipping SN bases mapped: 200 # ignores clipping SN bases mapped (cigar): 199 # more accurate SN bases trimmed: 0 SN bases duplicated: 0 SN mismatches: 6 # from NM fields SN error rate: 3.015075e-02 # mismatches / bases mapped (cigar) SN average length: 100 SN average first fragment length: 100 SN average last fragment length: 100 SN maximum length: 100 SN maximum first fragment length: 100 SN maximum last fragment length: 100 SN average quality: 36.2 SN insert size average: 165.0 SN insert size standard deviation: 0.0 SN inward oriented pairs: 1 SN outward oriented pairs: 0 SN pairs with other orientation: 0 SN pairs on different chromosomes: 0 SN percentage of properly paired reads (%): 100.0 SN bases inside the target: 166 SN percentage of target genome with coverage > 0 (%): 99.40 # First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part. # Columns correspond to qualities and rows to cycles. First column is the cycle number. FFQ 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 FFQ 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 FFQ 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 FFQ 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 FFQ 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 FFQ 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 FFQ 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 FFQ 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 FFQ 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 FFQ 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 FFQ 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 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Use `grep ^LFQ | cut -f 2-` to extract this part. # Columns correspond to qualities and rows to cycles. First column is the cycle number. LFQ 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LFQ 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 LFQ 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 LFQ 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 LFQ 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 LFQ 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 LFQ 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 LFQ 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 LFQ 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 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LFQ 32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 LFQ 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 LFQ 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 LFQ 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 LFQ 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 LFQ 38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 LFQ 39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 LFQ 41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 LFQ 42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 LFQ 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 LFQ 44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 LFQ 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 LFQ 49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 LFQ 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 LFQ 51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 LFQ 53 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 LFQ 54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 LFQ 55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 57 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 LFQ 58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 LFQ 59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 LFQ 60 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 LFQ 62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 LFQ 64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 LFQ 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 LFQ 69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 LFQ 70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 LFQ 73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 LFQ 81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 LFQ 83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 LFQ 84 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 LFQ 86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 LFQ 87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 88 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 LFQ 89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 LFQ 90 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 LFQ 92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 LFQ 93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 LFQ 95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 LFQ 97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 LFQ 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LFQ 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LFQ 100 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part. GCF 17.34 0 GCF 35.18 1 # GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part. GCL 21.36 0 GCL 43.22 1 # ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] GCC 1 0.00 0.00 50.00 50.00 0.00 0.00 GCC 2 0.00 0.00 100.00 0.00 0.00 0.00 GCC 3 50.00 50.00 0.00 0.00 0.00 0.00 GCC 4 0.00 0.00 100.00 0.00 0.00 0.00 GCC 5 50.00 0.00 50.00 0.00 0.00 0.00 GCC 6 0.00 50.00 0.00 50.00 0.00 0.00 GCC 7 0.00 0.00 50.00 50.00 0.00 0.00 GCC 8 50.00 0.00 50.00 0.00 0.00 0.00 GCC 9 50.00 50.00 0.00 0.00 0.00 0.00 GCC 10 50.00 50.00 0.00 0.00 0.00 0.00 GCC 11 0.00 50.00 50.00 0.00 0.00 0.00 GCC 12 0.00 0.00 0.00 100.00 0.00 0.00 GCC 13 0.00 0.00 100.00 0.00 0.00 0.00 GCC 14 100.00 0.00 0.00 0.00 0.00 0.00 GCC 15 50.00 0.00 50.00 0.00 0.00 0.00 GCC 16 0.00 100.00 0.00 0.00 0.00 0.00 GCC 17 50.00 50.00 0.00 0.00 0.00 0.00 GCC 18 50.00 0.00 0.00 50.00 0.00 0.00 GCC 19 100.00 0.00 0.00 0.00 0.00 0.00 GCC 20 0.00 0.00 100.00 0.00 0.00 0.00 GCC 21 100.00 0.00 0.00 0.00 0.00 0.00 GCC 22 0.00 0.00 50.00 50.00 0.00 0.00 GCC 23 50.00 0.00 0.00 50.00 0.00 0.00 GCC 24 0.00 0.00 100.00 0.00 0.00 0.00 GCC 25 50.00 0.00 0.00 50.00 0.00 0.00 GCC 26 50.00 0.00 50.00 0.00 0.00 0.00 GCC 27 0.00 50.00 50.00 0.00 0.00 0.00 GCC 28 50.00 0.00 0.00 50.00 0.00 0.00 GCC 29 50.00 50.00 0.00 0.00 0.00 0.00 GCC 30 50.00 50.00 0.00 0.00 0.00 0.00 GCC 31 0.00 0.00 50.00 50.00 0.00 0.00 GCC 32 50.00 0.00 50.00 0.00 0.00 0.00 GCC 33 50.00 50.00 0.00 0.00 0.00 0.00 GCC 34 100.00 0.00 0.00 0.00 0.00 0.00 GCC 35 0.00 0.00 50.00 50.00 0.00 0.00 GCC 36 0.00 50.00 50.00 0.00 0.00 0.00 GCC 37 50.00 50.00 0.00 0.00 0.00 0.00 GCC 38 0.00 50.00 0.00 50.00 0.00 0.00 GCC 39 50.00 0.00 0.00 50.00 0.00 0.00 GCC 40 0.00 50.00 50.00 0.00 0.00 0.00 GCC 41 50.00 50.00 0.00 0.00 0.00 0.00 GCC 42 0.00 50.00 0.00 50.00 0.00 0.00 GCC 43 0.00 50.00 0.00 50.00 0.00 0.00 GCC 44 0.00 0.00 50.00 50.00 0.00 0.00 GCC 45 50.00 50.00 0.00 0.00 0.00 0.00 GCC 46 0.00 0.00 50.00 50.00 0.00 0.00 GCC 47 50.00 50.00 0.00 0.00 0.00 0.00 GCC 48 0.00 100.00 0.00 0.00 0.00 0.00 GCC 49 0.00 0.00 0.00 100.00 0.00 0.00 GCC 50 50.00 0.00 50.00 0.00 0.00 0.00 GCC 51 0.00 50.00 50.00 0.00 0.00 0.00 GCC 52 0.00 0.00 50.00 50.00 0.00 0.00 GCC 53 0.00 0.00 50.00 50.00 0.00 0.00 GCC 54 0.00 0.00 50.00 50.00 0.00 0.00 GCC 55 100.00 0.00 0.00 0.00 0.00 0.00 GCC 56 0.00 100.00 0.00 0.00 0.00 0.00 GCC 57 50.00 0.00 0.00 50.00 0.00 0.00 GCC 58 0.00 0.00 50.00 50.00 0.00 0.00 GCC 59 50.00 0.00 0.00 50.00 0.00 0.00 GCC 60 0.00 0.00 50.00 50.00 0.00 0.00 GCC 61 50.00 0.00 0.00 50.00 0.00 0.00 GCC 62 0.00 0.00 100.00 0.00 0.00 0.00 GCC 63 100.00 0.00 0.00 0.00 0.00 0.00 GCC 64 0.00 50.00 50.00 0.00 0.00 0.00 GCC 65 50.00 0.00 50.00 0.00 0.00 0.00 GCC 66 50.00 50.00 0.00 0.00 0.00 0.00 GCC 67 50.00 0.00 0.00 50.00 0.00 0.00 GCC 68 50.00 50.00 0.00 0.00 0.00 0.00 GCC 69 50.00 50.00 0.00 0.00 0.00 0.00 GCC 70 100.00 0.00 0.00 0.00 0.00 0.00 GCC 71 50.00 0.00 0.00 50.00 0.00 0.00 GCC 72 50.00 50.00 0.00 0.00 0.00 0.00 GCC 73 50.00 0.00 0.00 50.00 0.00 0.00 GCC 74 50.00 50.00 0.00 0.00 0.00 0.00 GCC 75 100.00 0.00 0.00 0.00 0.00 0.00 GCC 76 50.00 50.00 0.00 0.00 0.00 0.00 GCC 77 100.00 0.00 0.00 0.00 0.00 0.00 GCC 78 100.00 0.00 0.00 0.00 0.00 0.00 GCC 79 100.00 0.00 0.00 0.00 0.00 0.00 GCC 80 100.00 0.00 0.00 0.00 0.00 0.00 GCC 81 100.00 0.00 0.00 0.00 0.00 0.00 GCC 82 100.00 0.00 0.00 0.00 0.00 0.00 GCC 83 100.00 0.00 0.00 0.00 0.00 0.00 GCC 84 100.00 0.00 0.00 0.00 0.00 0.00 GCC 85 100.00 0.00 0.00 0.00 0.00 0.00 GCC 86 100.00 0.00 0.00 0.00 0.00 0.00 GCC 87 100.00 0.00 0.00 0.00 0.00 0.00 GCC 88 100.00 0.00 0.00 0.00 0.00 0.00 GCC 89 100.00 0.00 0.00 0.00 0.00 0.00 GCC 90 100.00 0.00 0.00 0.00 0.00 0.00 GCC 91 50.00 50.00 0.00 0.00 0.00 0.00 GCC 92 50.00 50.00 0.00 0.00 0.00 0.00 GCC 93 50.00 50.00 0.00 0.00 0.00 0.00 GCC 94 100.00 0.00 0.00 0.00 0.00 0.00 GCC 95 50.00 50.00 0.00 0.00 0.00 0.00 GCC 96 50.00 50.00 0.00 0.00 0.00 0.00 GCC 97 50.00 50.00 0.00 0.00 0.00 0.00 GCC 98 50.00 50.00 0.00 0.00 0.00 0.00 GCC 99 50.00 50.00 0.00 0.00 0.00 0.00 GCC 100 100.00 0.00 0.00 0.00 0.00 0.00 # ACGT content per cycle, read oriented. Use `grep ^GCT | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%] GCT 1 50.00 0.00 50.00 0.00 GCT 2 0.00 50.00 50.00 0.00 GCT 3 0.00 50.00 0.00 50.00 GCT 4 0.00 50.00 50.00 0.00 GCT 5 0.00 0.00 50.00 50.00 GCT 6 0.00 0.00 50.00 50.00 GCT 7 0.00 50.00 0.00 50.00 GCT 8 0.00 0.00 50.00 50.00 GCT 9 0.00 50.00 0.00 50.00 GCT 10 50.00 0.00 50.00 0.00 GCT 11 0.00 0.00 100.00 0.00 GCT 12 50.00 0.00 0.00 50.00 GCT 13 0.00 50.00 50.00 0.00 GCT 14 50.00 0.00 0.00 50.00 GCT 15 0.00 0.00 50.00 50.00 GCT 16 0.00 50.00 50.00 0.00 GCT 17 0.00 50.00 0.00 50.00 GCT 18 100.00 0.00 0.00 0.00 GCT 19 50.00 0.00 0.00 50.00 GCT 20 0.00 50.00 50.00 0.00 GCT 21 50.00 0.00 0.00 50.00 GCT 22 0.00 50.00 0.00 50.00 GCT 23 0.00 0.00 0.00 100.00 GCT 24 0.00 50.00 50.00 0.00 GCT 25 0.00 0.00 0.00 100.00 GCT 26 0.00 0.00 50.00 50.00 GCT 27 0.00 100.00 0.00 0.00 GCT 28 0.00 0.00 0.00 100.00 GCT 29 50.00 0.00 50.00 0.00 GCT 30 0.00 50.00 0.00 50.00 GCT 31 0.00 50.00 0.00 50.00 GCT 32 0.00 0.00 50.00 50.00 GCT 33 0.00 50.00 0.00 50.00 GCT 34 50.00 0.00 0.00 50.00 GCT 35 0.00 50.00 0.00 50.00 GCT 36 0.00 100.00 0.00 0.00 GCT 37 0.00 50.00 0.00 50.00 GCT 38 50.00 50.00 0.00 0.00 GCT 39 100.00 0.00 0.00 0.00 GCT 40 0.00 0.00 100.00 0.00 GCT 41 0.00 50.00 0.00 50.00 GCT 42 50.00 50.00 0.00 0.00 GCT 43 0.00 0.00 50.00 50.00 GCT 44 50.00 0.00 50.00 0.00 GCT 45 50.00 0.00 50.00 0.00 GCT 46 50.00 0.00 50.00 0.00 GCT 47 50.00 0.00 50.00 0.00 GCT 48 0.00 50.00 50.00 0.00 GCT 49 50.00 0.00 0.00 50.00 GCT 50 0.00 0.00 50.00 50.00 GCT 51 0.00 0.00 100.00 0.00 GCT 52 50.00 0.00 50.00 0.00 GCT 53 0.00 50.00 0.00 50.00 GCT 54 50.00 0.00 50.00 0.00 GCT 55 50.00 0.00 0.00 50.00 GCT 56 0.00 50.00 50.00 0.00 GCT 57 100.00 0.00 0.00 0.00 GCT 58 50.00 0.00 50.00 0.00 GCT 59 100.00 0.00 0.00 0.00 GCT 60 50.00 0.00 50.00 0.00 GCT 61 0.00 0.00 0.00 100.00 GCT 62 0.00 50.00 50.00 0.00 GCT 63 50.00 0.00 0.00 50.00 GCT 64 0.00 0.00 100.00 0.00 GCT 65 50.00 50.00 0.00 0.00 GCT 66 0.00 50.00 0.00 50.00 GCT 67 0.00 0.00 0.00 100.00 GCT 68 0.00 50.00 0.00 50.00 GCT 69 0.00 50.00 0.00 50.00 GCT 70 50.00 0.00 0.00 50.00 GCT 71 0.00 0.00 0.00 100.00 GCT 72 0.00 50.00 0.00 50.00 GCT 73 0.00 0.00 0.00 100.00 GCT 74 0.00 50.00 0.00 50.00 GCT 75 50.00 0.00 0.00 50.00 GCT 76 0.00 50.00 0.00 50.00 GCT 77 50.00 0.00 0.00 50.00 GCT 78 50.00 0.00 0.00 50.00 GCT 79 50.00 0.00 0.00 50.00 GCT 80 50.00 0.00 0.00 50.00 GCT 81 50.00 0.00 0.00 50.00 GCT 82 50.00 0.00 0.00 50.00 GCT 83 50.00 0.00 0.00 50.00 GCT 84 50.00 0.00 0.00 50.00 GCT 85 50.00 0.00 0.00 50.00 GCT 86 50.00 0.00 0.00 50.00 GCT 87 50.00 0.00 0.00 50.00 GCT 88 50.00 0.00 0.00 50.00 GCT 89 50.00 0.00 0.00 50.00 GCT 90 50.00 0.00 0.00 50.00 GCT 91 50.00 0.00 50.00 0.00 GCT 92 50.00 0.00 50.00 0.00 GCT 93 50.00 0.00 50.00 0.00 GCT 94 50.00 0.00 0.00 50.00 GCT 95 50.00 0.00 50.00 0.00 GCT 96 50.00 0.00 50.00 0.00 GCT 97 50.00 0.00 50.00 0.00 GCT 98 50.00 0.00 50.00 0.00 GCT 99 50.00 0.00 50.00 0.00 GCT 100 50.00 0.00 0.00 50.00 # ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] FBC 1 0.00 0.00 0.00 100.00 0.00 0.00 FBC 2 0.00 0.00 100.00 0.00 0.00 0.00 FBC 3 100.00 0.00 0.00 0.00 0.00 0.00 FBC 4 0.00 0.00 100.00 0.00 0.00 0.00 FBC 5 100.00 0.00 0.00 0.00 0.00 0.00 FBC 6 0.00 100.00 0.00 0.00 0.00 0.00 FBC 7 0.00 0.00 100.00 0.00 0.00 0.00 FBC 8 100.00 0.00 0.00 0.00 0.00 0.00 FBC 9 100.00 0.00 0.00 0.00 0.00 0.00 FBC 10 0.00 100.00 0.00 0.00 0.00 0.00 FBC 11 0.00 100.00 0.00 0.00 0.00 0.00 FBC 12 0.00 0.00 0.00 100.00 0.00 0.00 FBC 13 0.00 0.00 100.00 0.00 0.00 0.00 FBC 14 100.00 0.00 0.00 0.00 0.00 0.00 FBC 15 100.00 0.00 0.00 0.00 0.00 0.00 FBC 16 0.00 100.00 0.00 0.00 0.00 0.00 FBC 17 100.00 0.00 0.00 0.00 0.00 0.00 FBC 18 0.00 0.00 0.00 100.00 0.00 0.00 FBC 19 100.00 0.00 0.00 0.00 0.00 0.00 FBC 20 0.00 0.00 100.00 0.00 0.00 0.00 FBC 21 100.00 0.00 0.00 0.00 0.00 0.00 FBC 22 0.00 0.00 100.00 0.00 0.00 0.00 FBC 23 100.00 0.00 0.00 0.00 0.00 0.00 FBC 24 0.00 0.00 100.00 0.00 0.00 0.00 FBC 25 100.00 0.00 0.00 0.00 0.00 0.00 FBC 26 100.00 0.00 0.00 0.00 0.00 0.00 FBC 27 0.00 0.00 100.00 0.00 0.00 0.00 FBC 28 100.00 0.00 0.00 0.00 0.00 0.00 FBC 29 0.00 100.00 0.00 0.00 0.00 0.00 FBC 30 100.00 0.00 0.00 0.00 0.00 0.00 FBC 31 0.00 0.00 100.00 0.00 0.00 0.00 FBC 32 100.00 0.00 0.00 0.00 0.00 0.00 FBC 33 100.00 0.00 0.00 0.00 0.00 0.00 FBC 34 100.00 0.00 0.00 0.00 0.00 0.00 FBC 35 0.00 0.00 100.00 0.00 0.00 0.00 FBC 36 0.00 0.00 100.00 0.00 0.00 0.00 FBC 37 100.00 0.00 0.00 0.00 0.00 0.00 FBC 38 0.00 0.00 0.00 100.00 0.00 0.00 FBC 39 0.00 0.00 0.00 100.00 0.00 0.00 FBC 40 0.00 100.00 0.00 0.00 0.00 0.00 FBC 41 100.00 0.00 0.00 0.00 0.00 0.00 FBC 42 0.00 0.00 0.00 100.00 0.00 0.00 FBC 43 0.00 100.00 0.00 0.00 0.00 0.00 FBC 44 0.00 0.00 0.00 100.00 0.00 0.00 FBC 45 0.00 100.00 0.00 0.00 0.00 0.00 FBC 46 0.00 0.00 0.00 100.00 0.00 0.00 FBC 47 0.00 100.00 0.00 0.00 0.00 0.00 FBC 48 0.00 100.00 0.00 0.00 0.00 0.00 FBC 49 0.00 0.00 0.00 100.00 0.00 0.00 FBC 50 100.00 0.00 0.00 0.00 0.00 0.00 FBC 51 0.00 100.00 0.00 0.00 0.00 0.00 FBC 52 0.00 0.00 0.00 100.00 0.00 0.00 FBC 53 0.00 0.00 100.00 0.00 0.00 0.00 FBC 54 0.00 0.00 0.00 100.00 0.00 0.00 FBC 55 100.00 0.00 0.00 0.00 0.00 0.00 FBC 56 0.00 100.00 0.00 0.00 0.00 0.00 FBC 57 0.00 0.00 0.00 100.00 0.00 0.00 FBC 58 0.00 0.00 0.00 100.00 0.00 0.00 FBC 59 0.00 0.00 0.00 100.00 0.00 0.00 FBC 60 0.00 0.00 0.00 100.00 0.00 0.00 FBC 61 100.00 0.00 0.00 0.00 0.00 0.00 FBC 62 0.00 0.00 100.00 0.00 0.00 0.00 FBC 63 100.00 0.00 0.00 0.00 0.00 0.00 FBC 64 0.00 100.00 0.00 0.00 0.00 0.00 FBC 65 0.00 0.00 100.00 0.00 0.00 0.00 FBC 66 100.00 0.00 0.00 0.00 0.00 0.00 FBC 67 100.00 0.00 0.00 0.00 0.00 0.00 FBC 68 100.00 0.00 0.00 0.00 0.00 0.00 FBC 69 100.00 0.00 0.00 0.00 0.00 0.00 FBC 70 100.00 0.00 0.00 0.00 0.00 0.00 FBC 71 100.00 0.00 0.00 0.00 0.00 0.00 FBC 72 100.00 0.00 0.00 0.00 0.00 0.00 FBC 73 100.00 0.00 0.00 0.00 0.00 0.00 FBC 74 100.00 0.00 0.00 0.00 0.00 0.00 FBC 75 100.00 0.00 0.00 0.00 0.00 0.00 FBC 76 100.00 0.00 0.00 0.00 0.00 0.00 FBC 77 100.00 0.00 0.00 0.00 0.00 0.00 FBC 78 100.00 0.00 0.00 0.00 0.00 0.00 FBC 79 100.00 0.00 0.00 0.00 0.00 0.00 FBC 80 100.00 0.00 0.00 0.00 0.00 0.00 FBC 81 100.00 0.00 0.00 0.00 0.00 0.00 FBC 82 100.00 0.00 0.00 0.00 0.00 0.00 FBC 83 100.00 0.00 0.00 0.00 0.00 0.00 FBC 84 100.00 0.00 0.00 0.00 0.00 0.00 FBC 85 100.00 0.00 0.00 0.00 0.00 0.00 FBC 86 100.00 0.00 0.00 0.00 0.00 0.00 FBC 87 100.00 0.00 0.00 0.00 0.00 0.00 FBC 88 100.00 0.00 0.00 0.00 0.00 0.00 FBC 89 100.00 0.00 0.00 0.00 0.00 0.00 FBC 90 100.00 0.00 0.00 0.00 0.00 0.00 FBC 91 0.00 100.00 0.00 0.00 0.00 0.00 FBC 92 0.00 100.00 0.00 0.00 0.00 0.00 FBC 93 0.00 100.00 0.00 0.00 0.00 0.00 FBC 94 100.00 0.00 0.00 0.00 0.00 0.00 FBC 95 0.00 100.00 0.00 0.00 0.00 0.00 FBC 96 0.00 100.00 0.00 0.00 0.00 0.00 FBC 97 0.00 100.00 0.00 0.00 0.00 0.00 FBC 98 0.00 100.00 0.00 0.00 0.00 0.00 FBC 99 0.00 100.00 0.00 0.00 0.00 0.00 FBC 100 100.00 0.00 0.00 0.00 0.00 0.00 # ACGT raw counters for first fragments. Use `grep ^FTC | cut -f 2-` to extract this part. The columns are: A,C,G,T,N base counters FTC 50 21 14 15 0 # ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] LBC 1 0.00 0.00 100.00 0.00 0.00 0.00 LBC 2 0.00 0.00 100.00 0.00 0.00 0.00 LBC 3 0.00 100.00 0.00 0.00 0.00 0.00 LBC 4 0.00 0.00 100.00 0.00 0.00 0.00 LBC 5 0.00 0.00 100.00 0.00 0.00 0.00 LBC 6 0.00 0.00 0.00 100.00 0.00 0.00 LBC 7 0.00 0.00 0.00 100.00 0.00 0.00 LBC 8 0.00 0.00 100.00 0.00 0.00 0.00 LBC 9 0.00 100.00 0.00 0.00 0.00 0.00 LBC 10 100.00 0.00 0.00 0.00 0.00 0.00 LBC 11 0.00 0.00 100.00 0.00 0.00 0.00 LBC 12 0.00 0.00 0.00 100.00 0.00 0.00 LBC 13 0.00 0.00 100.00 0.00 0.00 0.00 LBC 14 100.00 0.00 0.00 0.00 0.00 0.00 LBC 15 0.00 0.00 100.00 0.00 0.00 0.00 LBC 16 0.00 100.00 0.00 0.00 0.00 0.00 LBC 17 0.00 100.00 0.00 0.00 0.00 0.00 LBC 18 100.00 0.00 0.00 0.00 0.00 0.00 LBC 19 100.00 0.00 0.00 0.00 0.00 0.00 LBC 20 0.00 0.00 100.00 0.00 0.00 0.00 LBC 21 100.00 0.00 0.00 0.00 0.00 0.00 LBC 22 0.00 0.00 0.00 100.00 0.00 0.00 LBC 23 0.00 0.00 0.00 100.00 0.00 0.00 LBC 24 0.00 0.00 100.00 0.00 0.00 0.00 LBC 25 0.00 0.00 0.00 100.00 0.00 0.00 LBC 26 0.00 0.00 100.00 0.00 0.00 0.00 LBC 27 0.00 100.00 0.00 0.00 0.00 0.00 LBC 28 0.00 0.00 0.00 100.00 0.00 0.00 LBC 29 100.00 0.00 0.00 0.00 0.00 0.00 LBC 30 0.00 100.00 0.00 0.00 0.00 0.00 LBC 31 0.00 0.00 0.00 100.00 0.00 0.00 LBC 32 0.00 0.00 100.00 0.00 0.00 0.00 LBC 33 0.00 100.00 0.00 0.00 0.00 0.00 LBC 34 100.00 0.00 0.00 0.00 0.00 0.00 LBC 35 0.00 0.00 0.00 100.00 0.00 0.00 LBC 36 0.00 100.00 0.00 0.00 0.00 0.00 LBC 37 0.00 100.00 0.00 0.00 0.00 0.00 LBC 38 0.00 100.00 0.00 0.00 0.00 0.00 LBC 39 100.00 0.00 0.00 0.00 0.00 0.00 LBC 40 0.00 0.00 100.00 0.00 0.00 0.00 LBC 41 0.00 100.00 0.00 0.00 0.00 0.00 LBC 42 0.00 100.00 0.00 0.00 0.00 0.00 LBC 43 0.00 0.00 0.00 100.00 0.00 0.00 LBC 44 0.00 0.00 100.00 0.00 0.00 0.00 LBC 45 100.00 0.00 0.00 0.00 0.00 0.00 LBC 46 0.00 0.00 100.00 0.00 0.00 0.00 LBC 47 100.00 0.00 0.00 0.00 0.00 0.00 LBC 48 0.00 100.00 0.00 0.00 0.00 0.00 LBC 49 0.00 0.00 0.00 100.00 0.00 0.00 LBC 50 0.00 0.00 100.00 0.00 0.00 0.00 LBC 51 0.00 0.00 100.00 0.00 0.00 0.00 LBC 52 0.00 0.00 100.00 0.00 0.00 0.00 LBC 53 0.00 0.00 0.00 100.00 0.00 0.00 LBC 54 0.00 0.00 100.00 0.00 0.00 0.00 LBC 55 100.00 0.00 0.00 0.00 0.00 0.00 LBC 56 0.00 100.00 0.00 0.00 0.00 0.00 LBC 57 100.00 0.00 0.00 0.00 0.00 0.00 LBC 58 0.00 0.00 100.00 0.00 0.00 0.00 LBC 59 100.00 0.00 0.00 0.00 0.00 0.00 LBC 60 0.00 0.00 100.00 0.00 0.00 0.00 LBC 61 0.00 0.00 0.00 100.00 0.00 0.00 LBC 62 0.00 0.00 100.00 0.00 0.00 0.00 LBC 63 100.00 0.00 0.00 0.00 0.00 0.00 LBC 64 0.00 0.00 100.00 0.00 0.00 0.00 LBC 65 100.00 0.00 0.00 0.00 0.00 0.00 LBC 66 0.00 100.00 0.00 0.00 0.00 0.00 LBC 67 0.00 0.00 0.00 100.00 0.00 0.00 LBC 68 0.00 100.00 0.00 0.00 0.00 0.00 LBC 69 0.00 100.00 0.00 0.00 0.00 0.00 LBC 70 100.00 0.00 0.00 0.00 0.00 0.00 LBC 71 0.00 0.00 0.00 100.00 0.00 0.00 LBC 72 0.00 100.00 0.00 0.00 0.00 0.00 LBC 73 0.00 0.00 0.00 100.00 0.00 0.00 LBC 74 0.00 100.00 0.00 0.00 0.00 0.00 LBC 75 100.00 0.00 0.00 0.00 0.00 0.00 LBC 76 0.00 100.00 0.00 0.00 0.00 0.00 LBC 77 100.00 0.00 0.00 0.00 0.00 0.00 LBC 78 100.00 0.00 0.00 0.00 0.00 0.00 LBC 79 100.00 0.00 0.00 0.00 0.00 0.00 LBC 80 100.00 0.00 0.00 0.00 0.00 0.00 LBC 81 100.00 0.00 0.00 0.00 0.00 0.00 LBC 82 100.00 0.00 0.00 0.00 0.00 0.00 LBC 83 100.00 0.00 0.00 0.00 0.00 0.00 LBC 84 100.00 0.00 0.00 0.00 0.00 0.00 LBC 85 100.00 0.00 0.00 0.00 0.00 0.00 LBC 86 100.00 0.00 0.00 0.00 0.00 0.00 LBC 87 100.00 0.00 0.00 0.00 0.00 0.00 LBC 88 100.00 0.00 0.00 0.00 0.00 0.00 LBC 89 100.00 0.00 0.00 0.00 0.00 0.00 LBC 90 100.00 0.00 0.00 0.00 0.00 0.00 LBC 91 100.00 0.00 0.00 0.00 0.00 0.00 LBC 92 100.00 0.00 0.00 0.00 0.00 0.00 LBC 93 100.00 0.00 0.00 0.00 0.00 0.00 LBC 94 100.00 0.00 0.00 0.00 0.00 0.00 LBC 95 100.00 0.00 0.00 0.00 0.00 0.00 LBC 96 100.00 0.00 0.00 0.00 0.00 0.00 LBC 97 100.00 0.00 0.00 0.00 0.00 0.00 LBC 98 100.00 0.00 0.00 0.00 0.00 0.00 LBC 99 100.00 0.00 0.00 0.00 0.00 0.00 LBC 100 100.00 0.00 0.00 0.00 0.00 0.00 # ACGT raw counters for last fragments. Use `grep ^LTC | cut -f 2-` to extract this part. The columns are: A,C,G,T,N base counters LTC 41 20 23 16 0 # ACGT content per cycle for barcodes. Use `grep ^BCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N counts as a percentage of all A/C/G/T bases [%] BCC1 2 0.00 0.00 100.00 0.00 0.00 BCC1 3 0.00 0.00 0.00 100.00 0.00 BCC1 4 0.00 100.00 0.00 0.00 0.00 BCC1 5 0.00 0.00 0.00 100.00 0.00 BCC1 6 100.00 0.00 0.00 0.00 0.00 BCC1 7 0.00 0.00 0.00 100.00 0.00 BCC1 8 0.00 100.00 0.00 0.00 0.00 # Barcode Qualities. Use `grep ^QTQ | cut -f 2-` to extract this part. # Columns correspond to qualities and rows to barcode cycles. First column is the cycle number. QTQ1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 QTQ1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 QTQ1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 QTQ1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 QTQ1 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 QTQ1 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 QTQ1 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 QTQ1 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 # Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs IS 0 0 0 0 0 IS 1 0 0 0 0 IS 2 0 0 0 0 IS 3 0 0 0 0 IS 4 0 0 0 0 IS 5 0 0 0 0 IS 6 0 0 0 0 IS 7 0 0 0 0 IS 8 0 0 0 0 IS 9 0 0 0 0 IS 10 0 0 0 0 IS 11 0 0 0 0 IS 12 0 0 0 0 IS 13 0 0 0 0 IS 14 0 0 0 0 IS 15 0 0 0 0 IS 16 0 0 0 0 IS 17 0 0 0 0 IS 18 0 0 0 0 IS 19 0 0 0 0 IS 20 0 0 0 0 IS 21 0 0 0 0 IS 22 0 0 0 0 IS 23 0 0 0 0 IS 24 0 0 0 0 IS 25 0 0 0 0 IS 26 0 0 0 0 IS 27 0 0 0 0 IS 28 0 0 0 0 IS 29 0 0 0 0 IS 30 0 0 0 0 IS 31 0 0 0 0 IS 32 0 0 0 0 IS 33 0 0 0 0 IS 34 0 0 0 0 IS 35 0 0 0 0 IS 36 0 0 0 0 IS 37 0 0 0 0 IS 38 0 0 0 0 IS 39 0 0 0 0 IS 40 0 0 0 0 IS 41 0 0 0 0 IS 42 0 0 0 0 IS 43 0 0 0 0 IS 44 0 0 0 0 IS 45 0 0 0 0 IS 46 0 0 0 0 IS 47 0 0 0 0 IS 48 0 0 0 0 IS 49 0 0 0 0 IS 50 0 0 0 0 IS 51 0 0 0 0 IS 52 0 0 0 0 IS 53 0 0 0 0 IS 54 0 0 0 0 IS 55 0 0 0 0 IS 56 0 0 0 0 IS 57 0 0 0 0 IS 58 0 0 0 0 IS 59 0 0 0 0 IS 60 0 0 0 0 IS 61 0 0 0 0 IS 62 0 0 0 0 IS 63 0 0 0 0 IS 64 0 0 0 0 IS 65 0 0 0 0 IS 66 0 0 0 0 IS 67 0 0 0 0 IS 68 0 0 0 0 IS 69 0 0 0 0 IS 70 0 0 0 0 IS 71 0 0 0 0 IS 72 0 0 0 0 IS 73 0 0 0 0 IS 74 0 0 0 0 IS 75 0 0 0 0 IS 76 0 0 0 0 IS 77 0 0 0 0 IS 78 0 0 0 0 IS 79 0 0 0 0 IS 80 0 0 0 0 IS 81 0 0 0 0 IS 82 0 0 0 0 IS 83 0 0 0 0 IS 84 0 0 0 0 IS 85 0 0 0 0 IS 86 0 0 0 0 IS 87 0 0 0 0 IS 88 0 0 0 0 IS 89 0 0 0 0 IS 90 0 0 0 0 IS 91 0 0 0 0 IS 92 0 0 0 0 IS 93 0 0 0 0 IS 94 0 0 0 0 IS 95 0 0 0 0 IS 96 0 0 0 0 IS 97 0 0 0 0 IS 98 0 0 0 0 IS 99 0 0 0 0 IS 100 0 0 0 0 IS 101 0 0 0 0 IS 102 0 0 0 0 IS 103 0 0 0 0 IS 104 0 0 0 0 IS 105 0 0 0 0 IS 106 0 0 0 0 IS 107 0 0 0 0 IS 108 0 0 0 0 IS 109 0 0 0 0 IS 110 0 0 0 0 IS 111 0 0 0 0 IS 112 0 0 0 0 IS 113 0 0 0 0 IS 114 0 0 0 0 IS 115 0 0 0 0 IS 116 0 0 0 0 IS 117 0 0 0 0 IS 118 0 0 0 0 IS 119 0 0 0 0 IS 120 0 0 0 0 IS 121 0 0 0 0 IS 122 0 0 0 0 IS 123 0 0 0 0 IS 124 0 0 0 0 IS 125 0 0 0 0 IS 126 0 0 0 0 IS 127 0 0 0 0 IS 128 0 0 0 0 IS 129 0 0 0 0 IS 130 0 0 0 0 IS 131 0 0 0 0 IS 132 0 0 0 0 IS 133 0 0 0 0 IS 134 0 0 0 0 IS 135 0 0 0 0 IS 136 0 0 0 0 IS 137 0 0 0 0 IS 138 0 0 0 0 IS 139 0 0 0 0 IS 140 0 0 0 0 IS 141 0 0 0 0 IS 142 0 0 0 0 IS 143 0 0 0 0 IS 144 0 0 0 0 IS 145 0 0 0 0 IS 146 0 0 0 0 IS 147 0 0 0 0 IS 148 0 0 0 0 IS 149 0 0 0 0 IS 150 0 0 0 0 IS 151 0 0 0 0 IS 152 0 0 0 0 IS 153 0 0 0 0 IS 154 0 0 0 0 IS 155 0 0 0 0 IS 156 0 0 0 0 IS 157 0 0 0 0 IS 158 0 0 0 0 IS 159 0 0 0 0 IS 160 0 0 0 0 IS 161 0 0 0 0 IS 162 0 0 0 0 IS 163 0 0 0 0 IS 164 0 0 0 0 IS 165 1 1 0 0 # Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count RL 100 2 # Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count FRL 100 1 # Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count LRL 100 1 # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions ID 2 0 1 ID 3 1 0 # Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev) IC 90 1 0 0 0 IC 97 0 0 1 0 # Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part. COV [1-1] 1 134 COV [2-2] 2 31 # GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile GCD 0.0 100.000 0.000 0.000 0.000 0.000 0.000