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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit 84db51c96845854eb42c1a9949e4b79316b41925
| author | iuc |
|---|---|
| date | Wed, 22 Jun 2022 07:48:55 +0000 |
| parents | e28839a4b932 |
| children |
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# Summary Numbers. raw total sequences: 200 # excluding supplementary and secondary reads filtered sequences: 0 sequences: 200 is sorted: 1 1st fragments: 100 last fragments: 100 reads mapped: 25 reads mapped and paired: 0 # paired-end technology bit set + both mates mapped reads unmapped: 175 reads properly paired: 0 # proper-pair bit set reads paired: 200 # paired-end technology bit set reads duplicated: 0 # PCR or optical duplicate bit set reads MQ0: 6 # mapped and MQ=0 reads QC failed: 0 non-primary alignments: 0 supplementary alignments: 0 total length: 50200 # ignores clipping total first fragment length: 25100 # ignores clipping total last fragment length: 25100 # ignores clipping bases mapped: 6275 # ignores clipping bases mapped (cigar): 6275 # more accurate bases trimmed: 0 bases duplicated: 0 mismatches: 591 # from NM fields error rate: 9.418327e-02 # mismatches / bases mapped (cigar) average length: 251 average first fragment length: 251 average last fragment length: 251 maximum length: 251 maximum first fragment length: 251 maximum last fragment length: 251 average quality: 34.7 insert size average: 0.0 insert size standard deviation: 0.0 inward oriented pairs: 0 outward oriented pairs: 0 pairs with other orientation: 0 pairs on different chromosomes: 0 percentage of properly paired reads (%): 0.0