diff scatterplot.xml @ 3:efda9a4a50e7 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/scatterplot commit 405b0656c97b3971605e09f77cf46ca1f4870346

--- a/scatterplot.xml	Thu Sep 15 11:14:37 2016 -0400
+++ b/scatterplot.xml	Sat Jun 03 09:29:30 2017 -0400
@@ -1,12 +1,20 @@
-<tool id="scatterplot_rpy" name="Scatterplot" version="1.0.2">
+<tool id="scatterplot_rpy" name="Scatterplot" version="1.0.3">
   <description>of two numeric columns</description>
   <requirements>
     <requirement type="package" version="1.9">numpy</requirement>
-    <!-- explicit R requirement is necessary for toolshed package, conda rpy2 comes with R -->
-    <requirement type="package" version="3.2.1">R</requirement>
-    <requirement type="package" version="2.7.8">rpy2</requirement>
+    <requirement type="package" version="2.8.5">rpy2</requirement>
   </requirements>
-  <command interpreter="python">scatterplot.py $input $out_file1 $col1 $col2 "$title" "$xlab" "$ylab"</command>
+  <command><![CDATA[
+      python '$__tool_directory__/scatterplot.py'
+        '$input'
+        '$out_file1'
+        $col1
+        $col2
+        '$title'
+        '$xlab'
+        '$ylab'
+  ]]>
+  </command>
   <inputs>
     <param name="input" type="data" format="tabular" label="Dataset" help="Dataset missing? See TIP below"/>
     <param name="col1" type="data_column" data_ref="input" numerical="True" label="Numerical column for x axis" />
@@ -29,7 +37,7 @@
       <output name="out_file1" file="scatterplot_out1.pdf" compare="sim_size" />
     </test>
   </tests>
-  <help>
+  <help><![CDATA[
 .. class:: infomark
 
 **TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
@@ -65,5 +73,8 @@
 - Create a simple scatterplot between the variables in column 2 and column 3 of the above dataset.
 
 .. image:: scatterplot.png
+]]>
 </help>
+<citations>
+</citations>
 </tool>