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view headWrapper.pl @ 2:f10412ed821f draft

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planemo upload commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
author devteam
date Tue, 21 Jul 2015 15:58:13 -0400
parents ecca14446e6a
children
line wrap: on
line source

#! /usr/bin/perl -w

use strict;
use warnings;

# a wrapper for head for use in galaxy
# headWrapper.pl [filename] [# lines to show] [output]

die "Check arguments" unless @ARGV == 3;
die "Line number must be an integer\n" unless $ARGV[1]=~ m/^\d+$/;

open (OUT, ">$ARGV[2]") or die "Cannot create $ARGV[2]:$!\n";
open (HEAD, "head -n $ARGV[1] $ARGV[0]|") or die "Cannot run head:$!\n";
while (<HEAD>) {
    print OUT;
}
close OUT;
close HEAD;